RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ANTXRLA6NF34 631 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 ZNF487B1APH4 448 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 FAM72CH0Y354 149 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 RAMP2O60895 175 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 RNASEH1O60930 286 aaKnown RBP18.72■□□□□ 0.59
CLN3-259ENST00000637551 RHOBTB1O94844 696 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 HOXD12P35452 270 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 NDST2P52849 883 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 COPAP53621 1224 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 GSDMDP57764 484 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 TPI1P60174 286 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 SLC25A11Q02978 314 aaKnown RBP18.72■□□□□ 0.59
CLN3-259ENST00000637551 MAP7D1Q3KQU3 841 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 FAM72AQ5TYM5 149 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 HEATR6Q6AI08 1181 aaKnown RBP18.72■□□□□ 0.59
CLN3-259ENST00000637551 FAM72DQ6L9T8 149 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 RWDD4Q6NW29 188 aaKnown RBP18.72■□□□□ 0.59
CLN3-259ENST00000637551 USP30Q70CQ3 517 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 TFAP2DQ7Z6R9 452 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 DSG4Q86SJ6 1040 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 FAM72BQ86X60 149 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 SH2D3CQ8N5H7 860 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 OR52K2Q8NGK3 314 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 CYB5D2Q8WUJ1 264 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 RUBCNQ92622 972 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 PRCCQ92733 491 aaPredicted RBP18.72■□□□□ 0.59
CLN3-259ENST00000637551 ISG20Q96AZ6 181 aaKnown RBP18.72■□□□□ 0.59
CLN3-259ENST00000637551 MKRN2Q9H000 416 aaKnown RBP18.72■□□□□ 0.59
CLN3-259ENST00000637551 PRDM16Q9HAZ2 1276 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 PRSS16Q9NQE7 514 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 VPS51Q9UID3 782 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 TPX2Q9ULW0 747 aaKnown RBP18.72■□□□□ 0.59
CLN3-259ENST00000637551 HPCAL4Q9UM19 191 aa18.72■□□□□ 0.59
CLN3-259ENST00000637551 WASH3PC4AMC7 463 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 RETP07949 1114 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 KRT7P08729 469 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 SLC1A1P43005 524 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 TTC31Q49AM3 519 aaPredicted RBP18.71■□□□□ 0.59
CLN3-259ENST00000637551 ZNF776Q68DI1 518 aaPredicted RBP18.71■□□□□ 0.59
CLN3-259ENST00000637551 CEP68Q76N32 757 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 DNAAF5Q86Y56 855 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 TMPRSS6Q8IU80 811 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 DCLK2Q8N568 766 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 FRS2Q8WU20 508 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 SIPA1Q96FS4 1042 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 PEBP4Q96S96 227 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 PSMB7Q99436 277 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 ITM2CQ9NQX7 267 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 SPTLC3Q9NUV7 552 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 GMEB2Q9UKD1 530 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 SNX10Q9Y5X0 201 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 CHD6Q8TD26 2715 aa18.71■□□□□ 0.59
CLN3-259ENST00000637551 BTNL10A8MVZ5 291 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 H3BRJ5 948 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 EEF2KO00418 725 aaKnown RBP18.7■□□□□ 0.58
CLN3-259ENST00000637551 ZMPSTE24O75844 475 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 ARL4AP40617 200 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 WASP42768 502 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 MAP1BP46821 2468 aaKnown RBP18.7■□□□□ 0.58
CLN3-259ENST00000637551 RSPO4Q2I0M5 234 aaPredicted RBP18.7■□□□□ 0.58
CLN3-259ENST00000637551 PLK5Q496M5 336 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 C9orf64Q5T6V5 341 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 LRRC38Q5VT99 294 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 PMS2CLQ68D20 193 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 RFX8Q6ZV50 586 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 KBTBD6Q86V97 674 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 SLC35G2Q8TBE7 412 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 ARHGEF2Q92974 986 aaKnown RBP18.7■□□□□ 0.58
CLN3-259ENST00000637551 HINFPQ9BQA5 517 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 PACSIN1Q9BY11 444 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 DHX35Q9H5Z1 703 aaKnown RBP18.7■□□□□ 0.58
CLN3-259ENST00000637551 ATP13A1Q9HD20 1204 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 ZDHHC4Q9NPG8 344 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 THADAQ6YHU6 1953 aa18.7■□□□□ 0.58
CLN3-259ENST00000637551 NUP205Q92621 2012 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 A0A0D9SEW6 157 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 CREB3O43889 395 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 NDUFA10O95299 355 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 ADH1BP00325 375 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 SERPINH1P50454 418 aaKnown RBP18.69■□□□□ 0.58
CLN3-259ENST00000637551 POLD3Q15054 466 aaPredicted RBP18.69■□□□□ 0.58
CLN3-259ENST00000637551 PDK2Q15119 407 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 INO80DQ53TQ3 878 aaPredicted RBP18.69■□□□□ 0.58
CLN3-259ENST00000637551 LRRC49Q8IUZ0 686 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 ABCA7Q8IZY2 2146 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 PYROXD2Q8N2H3 581 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 PGBD3Q8N328 593 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 PCDH20Q8N6Y1 951 aaKnown RBP18.69■□□□□ 0.58
CLN3-259ENST00000637551 CADM4Q8NFZ8 388 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 UBE2Q2Q8WVN8 375 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 PTPRN2Q92932 1015 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 DUSP15Q9H1R2 295 aaPredicted RBP18.69■□□□□ 0.58
CLN3-259ENST00000637551 POLR3BQ9NW08 1133 aaPredicted RBP18.69■□□□□ 0.58
CLN3-259ENST00000637551 PCSK1NQ9UHG2 260 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 FZD4Q9ULV1 537 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 FARP1Q9Y4F1 1045 aaPredicted RBP18.69■□□□□ 0.58
CLN3-259ENST00000637551 RAD54BQ9Y620 910 aa18.69■□□□□ 0.58
CLN3-259ENST00000637551 EPN1Q9Y6I3 576 aaPredicted RBP18.69■□□□□ 0.58
CLN3-259ENST00000637551 TNRC6BQ9UPQ9 1833 aaKnown RBP18.69■□□□□ 0.58
CLN3-259ENST00000637551 CEP192Q8TEP8 1941 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms