RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 SIT1Q9Y3P8 196 aa10.34□□□□□ -0.75
UPF1-213ENST00000601981 HCN4Q9Y3Q4 1203 aa10.34□□□□□ -0.75
UPF1-213ENST00000601981 NUP205Q92621 2012 aa10.34□□□□□ -0.75
UPF1-213ENST00000601981 CHD5Q8TDI0 1954 aa10.34□□□□□ -0.75
UPF1-213ENST00000601981 IGLV3-10A0A075B6K4 115 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 DRGXA6NNA5 263 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 H3BRJ5 948 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 EEF2KO00418 725 aaKnown RBP10.33□□□□□ -0.76
UPF1-213ENST00000601981 TIMM44O43615 452 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 ATG13O75143 517 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 LRIG2O94898 1065 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 GAS8O95995 478 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 ATP5BP06576 529 aaKnown RBP10.33□□□□□ -0.76
UPF1-213ENST00000601981 RHOCP08134 193 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 PABPC1P11940 636 aaKnown RBP10.33□□□□□ -0.76
UPF1-213ENST00000601981 KRT10P13645 584 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 RHOQP17081 205 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 AOC1P19801 751 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 CD72P21854 359 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 EPHB2P29323 1055 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 ECHS1P30084 290 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 OR1E1P30953 314 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 GGCXP38435 758 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 TNFRSF4P43489 277 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 SLC6A11P48066 632 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 MAPKAPK2P49137 400 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 CLCN5P51795 746 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 LMNB2Q03252 620 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 PTK6Q13882 451 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 HLTFQ14527 1009 aaKnown RBP eCLIP10.33□□□□□ -0.76
UPF1-213ENST00000601981 DMC1Q14565 340 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 LLGL1Q15334 1064 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 GAB4Q2WGN9 574 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 RAB6CQ53S08 254 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 PPP6R3Q5H9R7 873 aaPredicted RBP10.33□□□□□ -0.76
UPF1-213ENST00000601981 KCNT1Q5JUK3 1230 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 RNF43Q68DV7 783 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 ASTLQ6HA08 431 aaPredicted RBP10.33□□□□□ -0.76
UPF1-213ENST00000601981 SETD3Q86TU7 594 aaPredicted RBP10.33□□□□□ -0.76
UPF1-213ENST00000601981 C12orf40Q86WS4 652 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 FBXL6Q8N531 539 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 MREGQ8N565 214 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 TTC13Q8NBP0 860 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 ATL2Q8NHH9 583 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 ATG4AQ8WYN0 398 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 IGSF8Q969P0 613 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 ACDQ96AP0 544 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 HINFPQ9BQA5 517 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 FOXQ1Q9C009 403 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 RAB6CQ9H0N0 254 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 C11orf16Q9NQ32 467 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 ANLNQ9NQW6 1124 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 TMPRSS4Q9NRS4 437 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.33□□□□□ -0.767e-7■■■■□ 21.4
UPF1-213ENST00000601981 OGFRQ9NZT2 677 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 RCOR3Q9P2K3 495 aaPredicted RBP10.33□□□□□ -0.76
UPF1-213ENST00000601981 GGA2Q9UJY4 613 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 FBXO10Q9UK96 956 aa10.33□□□□□ -0.76
UPF1-213ENST00000601981 ZDBF2Q9HCK1 2354 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 PRR33A8MZF0 331 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 I6L893 689 aaPredicted RBP10.32□□□□□ -0.76
UPF1-213ENST00000601981 NPC1O15118 1278 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 LIASO43766 372 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 RRP9O43818 475 aaKnown RBP10.32□□□□□ -0.76
UPF1-213ENST00000601981 ASLP04424 464 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 POLR2EP19388 210 aaKnown RBP10.32□□□□□ -0.76
UPF1-213ENST00000601981 TARSP26639 723 aaKnown RBP10.32□□□□□ -0.76
UPF1-213ENST00000601981 HOXC13P31276 330 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 RPS9P46781 194 aaKnown RBP10.32□□□□□ -0.76
UPF1-213ENST00000601981 KCNJ1P48048 391 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 SGSHP51688 502 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 CDH6P55285 790 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 MRPS21P82921 87 aaKnown RBP10.32□□□□□ -0.76
UPF1-213ENST00000601981 SULT2A1Q06520 285 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 ADCY2Q08462 1091 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 SNX1Q13596 522 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 CCINQ13939 588 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 TFDP2Q14188 446 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 DPYSL3Q14195 570 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 PPP1R7Q15435 360 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 DPYSL2Q16555 572 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 HSF5Q4G112 596 aaPredicted RBP10.32□□□□□ -0.76
UPF1-213ENST00000601981 IER5LQ5T953 404 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 MANEALQ5VSG8 457 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 KAZNQ674X7 775 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 SDE2Q6IQ49 451 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 FSTL4Q6MZW2 842 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 ZNF783Q6ZMS7 281 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 C14orf80Q86SX3 495 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 CIR1Q86X95 450 aaPredicted RBP10.32□□□□□ -0.76
UPF1-213ENST00000601981 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.32□□□□□ -0.76
UPF1-213ENST00000601981 KCNV2Q8TDN2 545 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 NKD2Q969F2 451 aaPredicted RBP10.32□□□□□ -0.76
UPF1-213ENST00000601981 ZNF670Q9BS34 389 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 CIPCQ9C0C6 399 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 MUC3BQ9H195 1237 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 DPH5Q9H2P9 285 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 LMAN1LQ9HAT1 526 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 PCDH18Q9HCL0 1135 aa10.32□□□□□ -0.76
UPF1-213ENST00000601981 ABCB8Q9NUT2 735 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms