RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ENDOD1O94919 500 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 MT-CO1P00395 513 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 ARRB1P49407 418 aaPredicted RBP18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 DEUP1Q05D60 604 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 STAT4Q14765 748 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 DRAP1Q14919 205 aaPredicted RBP18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 COL28A1Q2UY09 1125 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 VWA3BQ502W6 1294 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 ALFQ53S48 1182 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 NAPEPLDQ6IQ20 393 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 LINGO4Q6UY18 593 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 SLC26A9Q7LBE3 791 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 TFAP2DQ7Z6R9 452 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 FAM114A1Q8IWE2 563 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 TMEM35BQ8NCS4 154 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 ALG14Q96F25 216 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 SPON2Q9BUD6 331 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 NDST4Q9H3R1 872 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 MPP6Q9NZW5 540 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 ADAMTS20P59510 1910 aa18.05■□□□□ 0.48
SHKBP1-223ENST00000600552 ACACAQ13085 2346 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 K7ERQ8 282 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 KPNA3O00505 521 aaPredicted RBP18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 SLC31A1O15431 190 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 ATP9BO43861 1147 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 RNGTTO60942 597 aaKnown RBP18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 SRGAP2O75044 1071 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 SDC3O75056 442 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 JUPP14923 745 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 RRM1P23921 792 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 CDH4P55283 916 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 NXPH1P58417 271 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 BPIFB4P59827 614 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 KRT83P78385 493 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 COL9A2Q14055 689 aaPredicted RBP18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 FAM102AQ5T9C2 384 aaPredicted RBP18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 LRRC31Q6UY01 552 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 ERICH1Q86X53 443 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 SH2D3CQ8N5H7 860 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 SAP25Q8TEE9 199 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 TBCBQ99426 244 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 TUBGCP2Q9BSJ2 902 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 ANLNQ9NQW6 1124 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 PPM1HQ9ULR3 514 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 STAP1Q9ULZ2 295 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 FARP1Q9Y4F1 1045 aaPredicted RBP18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 GPSM3Q9Y4H4 160 aa18.04■□□□□ 0.48
SHKBP1-223ENST00000600552 SPEGQ15772 3267 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 MCF2LO15068 1137 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 PLRG1O43660 514 aaKnown RBP18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 DKK1O94907 266 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 SRCP12931 536 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 PRLRP16471 622 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 EPHA8P29322 1005 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 OTUD1Q5VV17 481 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 PHLDB2Q86SQ0 1253 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 SPATS2Q86XZ4 545 aaKnown RBP18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 FAM71AQ8IYT1 594 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 MFSD2AQ8NA29 543 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 C18orf8Q96DM3 657 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 NPY6RQ99463 290 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 TNKS2Q9H2K2 1166 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 DYRK4Q9NR20 520 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 OR51B4Q9Y5P0 310 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 FHOD1Q9Y613 1164 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 URB1O60287 2271 aaKnown RBP18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 APC2O95996 2303 aa18.03■□□□□ 0.48
SHKBP1-223ENST00000600552 KNTC1P50748 2209 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 A0A0D9SEW6 157 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 SMAD6O43541 496 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 GLDCP23378 1020 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 CHRNA3P32297 505 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 CXCR3P49682 368 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 DNA2P51530 1060 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 MTA1Q13330 715 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 DPCR1Q3MIW9 517 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 SETMARQ53H47 684 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 AGBL4Q5VU57 503 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 ZDHHC17Q8IUH5 632 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 CHST14Q8NCH0 376 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 ZNF397Q8NF99 534 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 OR7D4Q8NG98 312 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 GRIN3AQ8TCU5 1115 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 CPA5Q8WXQ8 436 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 LRIG1Q96JA1 1093 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 DCBLD2Q96PD2 775 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 PSMB7Q99436 277 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 C2orf49Q9BVC5 232 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 CLSTN2Q9H4D0 955 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 FZD3Q9NPG1 666 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 ARHGEF38Q9NXL2 777 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 RRN3Q9NYV6 651 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 ARHGAP20Q9P2F6 1191 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 VPS51Q9UID3 782 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 TBC1D30Q9Y2I9 924 aa18.02■□□□□ 0.48
SHKBP1-223ENST00000600552 TDRD6O60522 2096 aaKnown RBP18.02■□□□□ 0.47
SHKBP1-223ENST00000600552 A0A1W2PQU0 124 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 SLC7A4O43246 635 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 LATO43561 262 aa18.01■□□□□ 0.47
SHKBP1-223ENST00000600552 RFPL3O75679 317 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms