RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	DNAJC12	Q9UKB3	198 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	PPM1H	Q9ULR3	514 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	CA5B	Q9Y2D0	317 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	ACACA	Q13085	2346 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	IGSF10	Q6WRI0	2623 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	SMG1	Q96Q15	3661 aa	Known RBP	10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	GTPBP10	A4D1E9	387 aa	Known RBP	10.81	□□□□□ -0.68
LSM4-205	ENST00000597776		K7ERQ8	282 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	YKT6	O15498	198 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	SLC7A4	O43246	635 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	SNAP91	O60641	907 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	SDC3	O75056	442 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	CLDN11	O75508	207 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	RFPL3	O75679	317 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	ADCY5	O95622	1261 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	CTSL	P07711	333 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	ZNF18	P17022	549 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	NOS2	P35228	1153 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	CLCN1	P35523	988 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	KRT9	P35527	623 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	ARRB1	P49407	418 aa	Predicted RBP	10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	ACADVL	P49748	655 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	VASP	P50552	380 aa	Predicted RBP	10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	TAS2R38	P59533	333 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	RNASE9	P60153	205 aa	Known RBP	10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	SLC6A3	Q01959	620 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	ALF	Q53S48	1182 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	SLC45A4	Q5BKX6	768 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	FAM46C	Q5VWP2	391 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	PRPF39	Q86UA1	669 aa	Known RBP	10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	SH2D3C	Q8N5H7	860 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	PDCD7	Q8N8D1	485 aa	Known RBP	10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	MFSD2A	Q8NA29	543 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	KLK6	Q92876	244 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	CRELD1	Q96HD1	420 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	LRIG1	Q96JA1	1093 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	PSMB7	Q99436	277 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	NPY6R	Q99463	290 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	TKTL2	Q9H0I9	626 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	KDM4C	Q9H3R0	1056 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	CAAP1	Q9H8G2	361 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	TMPRSS4	Q9NRS4	437 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	TBC1D30	Q9Y2I9	924 aa		10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	GOLGA4	Q13439	2230 aa	Known RBP	10.81	□□□□□ -0.68
LSM4-205	ENST00000597776	C1QTNF3-AMACR	E9PGA6	284 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	RNF103	O00237	685 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	MCF2L	O15068	1137 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	SLC31A1	O15431	190 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	SMAD6	O43541	496 aa	Known RBP	10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	RHOC	P08134	193 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	SRC	P12931	536 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	JUP	P14923	745 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	PRLR	P16471	622 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	RRM1	P23921	792 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	RXRG	P48443	463 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	CXCR3	P49682	368 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	SULT1E1	P49888	294 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	CDH4	P55283	916 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	HSP90AA4P	Q58FG1	418 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	PIP5KL1	Q5T9C9	394 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	HES3	Q5TGS1	186 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	SFMBT2	Q5VUG0	894 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	LINGO4	Q6UY18	593 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	KANSL1	Q7Z3B3	1105 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	TFAP2D	Q7Z6R9	452 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	TMPRSS12	Q86WS5	348 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	TRIM69	Q86WT6	500 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	FAM71A	Q8IYT1	594 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	ZNF683	Q8IZ20	524 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	ATP11C	Q8NB49	1132 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	CHST14	Q8NCH0	376 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	ZNF397	Q8NF99	534 aa	Predicted RBP	10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	TSC1	Q92574	1164 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	PPP1R9B	Q96SB3	815 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	TBCB	Q99426	244 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	ERVMER34-1	Q9H9K5	563 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	FZD3	Q9NPG1	666 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	ARHGEF38	Q9NXL2	777 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	VPS51	Q9UID3	782 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	TPX2	Q9ULW0	747 aa	Known RBP	10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	DMTF1	Q9Y222	760 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	HS3ST2	Q9Y278	367 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	PCDHGA1	Q9Y5H4	931 aa		10.8	□□□□□ -0.68
LSM4-205	ENST00000597776	BPTF	Q12830	3046 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776		A0A0D9SEW6	157 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776		A0A1W2PQU0	124 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	KPNA3	O00505	521 aa	Predicted RBP	10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	ALOX15B	O15296	676 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	RNGTT	O60942	597 aa	Known RBP	10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	GLDC	P23378	1020 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	UBE2H	P62256	183 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	DEUP1	Q05D60	604 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	MTA1	Q13330	715 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	RAPGEF1	Q13905	1077 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	STAT4	Q14765	748 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	ACAP1	Q15027	740 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	MAN2A1	Q16706	1144 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	TPD52L1	Q16890	204 aa	Predicted RBP	10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	C5orf22	Q49AR2	442 aa		10.79	□□□□□ -0.68
LSM4-205	ENST00000597776	SETMAR	Q53H47	684 aa	Predicted RBP	10.79	□□□□□ -0.68

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