RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 RETREG1Q9H6L5 497 aa20.26■□□□□ 0.83
TRIM47-204ENST00000587339 SP110Q9HB58 689 aa20.26■□□□□ 0.83
TRIM47-204ENST00000587339 PIH1D1Q9NWS0 290 aaKnown RBP20.26■□□□□ 0.83
TRIM47-204ENST00000587339 C5orf67F2Z3F1 127 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 CACNG3O60359 315 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 OLFM2O95897 454 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 MYOGP15173 224 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 STX2P32856 288 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 RENBPP51606 427 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 CLCN4P51793 760 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 EFTUD2Q15029 972 aaKnown RBP eCLIP20.25■□□□□ 0.836e-7■■■□□ 18.5
TRIM47-204ENST00000587339 CASC4Q6P4E1 433 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 OTOP3Q7RTS5 596 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 SPRED2Q7Z698 418 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 EXOC3L1Q86VI1 746 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 TMC8Q8IU68 726 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 HS6ST3Q8IZP7 471 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 CYP4X1Q8N118 509 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 FATE1Q969F0 183 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 ZFRQ96KR1 1074 aaKnown RBP20.25■□□□□ 0.83
TRIM47-204ENST00000587339 UBP1Q9NZI7 540 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 AAR2Q9Y312 384 aaKnown RBP20.25■□□□□ 0.83
TRIM47-204ENST00000587339 NYNRINQ9P2P1 1898 aaKnown RBP20.25■□□□□ 0.83
TRIM47-204ENST00000587339 A6NNZ2 444 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 J3KR12 359 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 USP12O75317 370 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 PIAS1O75925 651 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 GSTA2P09210 222 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 CDH4P55283 916 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 CYP4F8P98187 520 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 RASA2Q15283 850 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 TMED2Q15363 201 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 TUBB8Q3ZCM7 444 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 PPM1LQ5SGD2 360 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 UNC5AQ6ZN44 842 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 OR52K1Q8NGK4 314 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 WBP2Q969T9 261 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 PABPC5Q96DU9 382 aaKnown RBP20.25■□□□□ 0.83
TRIM47-204ENST00000587339 STAMBPL1Q96FJ0 436 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 PRICKLE1Q96MT3 831 aaPredicted RBP20.25■□□□□ 0.83
TRIM47-204ENST00000587339 FCRL5Q96RD9 977 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 DDX50Q9BQ39 737 aaKnown RBP20.25■□□□□ 0.83
TRIM47-204ENST00000587339 LRRC3Q9BY71 257 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 LRRC40Q9H9A6 602 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 GLOD4Q9HC38 313 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 PSMC3IPQ9P2W1 217 aaPredicted RBP20.25■□□□□ 0.83
TRIM47-204ENST00000587339 ANAPC1Q9H1A4 1944 aa20.25■□□□□ 0.83
TRIM47-204ENST00000587339 TRDMT1O14717 391 aaKnown RBP20.24■□□□□ 0.83
TRIM47-204ENST00000587339 PEX11BO96011 259 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 MGAT1P26572 445 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 RPS24P62847 133 aaKnown RBP20.24■□□□□ 0.83
TRIM47-204ENST00000587339 OLIG2Q13516 323 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 SERINC3Q13530 473 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 DNAAF3Q8N9W5 541 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 NSMCE1Q8WV22 266 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 OXNAD1Q96HP4 312 aaPredicted RBP20.24■□□□□ 0.83
TRIM47-204ENST00000587339 PPP1R2P1Q96PQ5 205 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 PAFAH2Q99487 392 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 CORO1BQ9BR76 489 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 ATXN3LQ9H3M9 355 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 CNOT10Q9H9A5 744 aaKnown RBP20.24■□□□□ 0.83
TRIM47-204ENST00000587339 CPQQ9Y646 472 aa20.24■□□□□ 0.83
TRIM47-204ENST00000587339 GRXCR1A8MXD5 290 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 CCL16O15467 120 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 PSMD3O43242 534 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 CLDN11O75508 207 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 ANXA9O76027 345 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 ARHGEF15O94989 841 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 HLA-DQB2P05538 268 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 RB1P06400 928 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 CKMP06732 381 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 CDC25CP30307 473 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 CRADDP78560 199 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 KBTBD12Q3ZCT8 623 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 MARC1Q5VT66 337 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 TTC19Q6DKK2 380 aaPredicted RBP20.23■□□□□ 0.83
TRIM47-204ENST00000587339 NAPEPLDQ6IQ20 393 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 CCNJLQ8IV13 435 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 MAB21L3Q8N8X9 362 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 SPATA22Q8NHS9 363 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 GSDMBQ8TAX9 411 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 SLC22A17Q8WUG5 538 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 GCNAQ96QF7 691 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 PLAC1Q9HBJ0 212 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 ASAH2Q9NR71 780 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 STOML2Q9UJZ1 356 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 A0A1W2PRU2 124 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 LATS1O95835 1130 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 MDH1P40925 334 aaKnown RBP20.23■□□□□ 0.83
TRIM47-204ENST00000587339 MSH2P43246 934 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 IFNAR2P48551 515 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 GUCY1A3Q02108 690 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 PPARDQ03181 441 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 IL10RBQ08334 325 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 NR1H3Q13133 447 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 C9orf50Q5SZB4 431 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 LINC00523Q86TU6 105 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 KLHDC8BQ8IXV7 354 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 SELENOSQ9BQE4 189 aa20.23■□□□□ 0.83
TRIM47-204ENST00000587339 TRIM56Q9BRZ2 755 aaKnown RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms