RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.97□□□□□ -1.61
SMCHD1-204ENST00000581226 FRMD8Q9BZ67 464 aaPredicted RBP4.97□□□□□ -1.61
SMCHD1-204ENST00000581226 RIC8AQ9NPQ8 531 aa4.97□□□□□ -1.61
SMCHD1-204ENST00000581226 SEMA4BQ9NPR2 832 aaPredicted RBP4.97□□□□□ -1.61
SMCHD1-204ENST00000581226 TLR8Q9NR97 1041 aaKnown RBP4.97□□□□□ -1.61
SMCHD1-204ENST00000581226 ANAPC4Q9UJX5 808 aa4.97□□□□□ -1.61
SMCHD1-204ENST00000581226 PCDHA12Q9UN75 941 aa4.97□□□□□ -1.61
SMCHD1-204ENST00000581226 TMEM272A0A1B0GTI8 110 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 ANP32CO43423 234 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 ATG13O75143 517 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 TULP3O75386 442 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 NDUFB8O95169 186 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 METTL18O95568 372 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 LMO1P25800 156 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 SLC16A2P36021 539 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 ALDH7A1P49419 539 aaKnown RBP4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 C5orf22Q49AR2 442 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 TTLL5Q6EMB2 1281 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 DENND1BQ6P3S1 775 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 AAGABQ6PD74 315 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 PIM3Q86V86 326 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 SCARB1Q8WTV0 552 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 TMEM174Q8WUU8 243 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 MASTLQ96GX5 879 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 IFT27Q9BW83 186 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 CTDSP1Q9GZU7 261 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 HIPK3Q9H422 1215 aa4.96□□□□□ -1.62
SMCHD1-204ENST00000581226 IGLV5-39A0A0G2JS06 123 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 PLEKHD1A6NEE1 506 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 CNPP09543 421 aaKnown RBP4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 CKMT1AP12532 417 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 LAMB3Q13751 1172 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 BYSLQ13895 437 aaKnown RBP4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 AP5B1Q2VPB7 878 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 AADACL2Q6P093 401 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 COLCA1Q6ZS62 124 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 KDELC2Q7Z4H8 507 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 IRF2BP2Q7Z5L9 587 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 SMAP1Q8IYB5 467 aaPredicted RBP4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 SLC25A41Q8N5S1 370 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 SCAIQ8N9R8 606 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 USP38Q8NB14 1042 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 CMASQ8NFW8 434 aaPredicted RBP4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 NCSTNQ92542 709 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 STAMQ92783 540 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 SLC25A28Q96A46 364 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 NLRP4Q96MN2 994 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 TWNKQ96RR1 684 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 ACTR5Q9H9F9 607 aaPredicted RBP4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 FZD3Q9NPG1 666 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 UPB1Q9UBR1 384 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 SUFUQ9UMX1 484 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 DHDHQ9UQ10 334 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 TNFRSF18Q9Y5U5 241 aa4.95□□□□□ -1.62
SMCHD1-204ENST00000581226 VWA3AA6NCI4 1184 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 KLK10O43240 276 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 STRNO43815 780 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 DHX16O60231 1041 aaKnown RBP4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 EPN2O95208 641 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 SYF2O95926 243 aaKnown RBP4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 BMP15O95972 392 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 WEE2P0C1S8 567 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 PSG1P11464 419 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 SKIV2L2P42285 1042 aaKnown RBP4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 RAPGEF1Q13905 1077 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 IL13RA2Q14627 380 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 TMEM268Q5VZI3 342 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 NUGGCQ68CJ6 796 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 CYP26C1Q6V0L0 522 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 TRAPPC11Q7Z392 1133 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 FAM185AQ8N0U4 392 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 DPP10Q8N608 796 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 RNFT2Q96EX2 444 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 UBXN10Q96LJ8 280 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 TASP1Q9H6P5 420 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 PNRC2Q9NPJ4 139 aaKnown RBP4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 ZBTB40Q9NUA8 1239 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 CD207Q9UJ71 328 aa4.94□□□□□ -1.62
SMCHD1-204ENST00000581226 TRBV5-7A0A0A0MS05 114 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 H3BNX3 289 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 PEX12O00623 359 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 TSPAN3O60637 253 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 IGKV2-30P06310 120 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 PRKCHP24723 683 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 MAPK9P45984 424 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 UBE3AQ05086 875 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 TWIST1Q15672 202 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 PRTGQ2VWP7 1150 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 TMEM95Q3KNT9 176 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 SH2D4BQ5SQS7 431 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 ASPHD1Q5U4P2 390 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 GPSM1Q86YR5 675 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 CPOQ8IVL8 374 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 TMEM199Q8N511 208 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 FAR1Q8WVX9 515 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 FRG2BQ96QU4 278 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 REEP2Q9BRK0 252 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 STN1Q9H668 368 aaKnown RBP4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 MAP6D1Q9H9H5 199 aa4.93□□□□□ -1.62
SMCHD1-204ENST00000581226 RNF146Q9NTX7 359 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms