RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 APCDD1Q8J025 514 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP25.67■■□□□ 1.7
SHMT1-207ENST00000580002 CNTD1Q8N815 330 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 NAT16Q8N8M0 369 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 OSCP1Q8WVF1 389 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 PWWP2AQ96N64 755 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 BBS2Q9BXC9 721 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 EBF3Q9H4W6 596 aa25.67■■□□□ 1.7
SHMT1-207ENST00000580002 UBE2ZQ9H832 354 aaPredicted RBP25.67■■□□□ 1.7
SHMT1-207ENST00000580002 TCRBV7S3A2A0A539 114 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 CFAP69A5D8W1 941 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 C5orf60A6NFR6 353 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 SNAP91O60641 907 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 PENKP01210 267 aaPredicted RBP25.66■■□□□ 1.7
SHMT1-207ENST00000580002 CD70P32970 193 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 YBEYP58557 167 aaPredicted RBP25.66■■□□□ 1.7
SHMT1-207ENST00000580002 GAD2Q05329 585 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 DHCR24Q15392 516 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 PARP15Q460N3 678 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 HABP4Q5JVS0 413 aaKnown RBP25.66■■□□□ 1.7
SHMT1-207ENST00000580002 C6orf118Q5T5N4 469 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 RNF43Q68DV7 783 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 IL31Q6EBC2 164 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 TTC8Q8TAM2 541 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 ALG14Q96F25 216 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 OR51B4Q9Y5P0 310 aa25.66■■□□□ 1.7
SHMT1-207ENST00000580002 ILVBLA1L0T0 632 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 ZBTB24O43167 697 aaPredicted RBP25.65■■□□□ 1.7
SHMT1-207ENST00000580002 GCATO75600 419 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 CYP17A1P05093 508 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 FAM153BP0C7A2 387 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 TYRP14679 529 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 FOSL2P15408 326 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 CD68P34810 354 aaPredicted RBP25.65■■□□□ 1.7
SHMT1-207ENST00000580002 PLTPP55058 493 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 LMAN2Q12907 356 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 CDH18Q13634 790 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 FAM153CQ494X1 144 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 ANKRD22Q5VYY1 191 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 SETD3Q86TU7 594 aaPredicted RBP25.65■■□□□ 1.7
SHMT1-207ENST00000580002 AGAP3Q96P47 875 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 MUC3BQ9H195 1237 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 MAGEH1Q9H213 219 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 FAM153AQ9UHL3 310 aa25.65■■□□□ 1.7
SHMT1-207ENST00000580002 MATN3O15232 486 aa25.64■■□□□ 1.7
SHMT1-207ENST00000580002 CCNB1P14635 433 aa25.64■■□□□ 1.7
SHMT1-207ENST00000580002 ITGA8P53708 1063 aa25.64■■□□□ 1.7
SHMT1-207ENST00000580002 IZUMO3Q5VZ72 239 aa25.64■■□□□ 1.7
SHMT1-207ENST00000580002 LMLNQ96KR4 655 aa25.64■■□□□ 1.7
SHMT1-207ENST00000580002 FAM83CQ9BQN1 747 aa25.64■■□□□ 1.7
SHMT1-207ENST00000580002 FEM1AQ9BSK4 669 aa25.64■■□□□ 1.7
SHMT1-207ENST00000580002 BRD8Q9H0E9 1235 aa25.64■■□□□ 1.7
SHMT1-207ENST00000580002 ZDHHC18Q9NUE0 388 aa25.64■■□□□ 1.7
SHMT1-207ENST00000580002 INTS6Q9UL03 887 aaKnown RBP25.64■■□□□ 1.7
SHMT1-207ENST00000580002 A0A0A0MRY4 1105 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 TYW5A2RUC4 315 aaKnown RBP25.64■■□□□ 1.69
SHMT1-207ENST00000580002 SEC31AO94979 1220 aaKnown RBP25.64■■□□□ 1.69
SHMT1-207ENST00000580002 CYBBP04839 570 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 IFNAR2P48551 515 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 SLC10A7Q0GE19 358 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 MPP7Q5T2T1 576 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 PID1Q7Z2X4 250 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 FBXO25Q8TCJ0 367 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 GDAP1L1Q96MZ0 367 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 SPATA13Q96N96 652 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 ACE2Q9BYF1 805 aaPredicted RBP25.64■■□□□ 1.69
SHMT1-207ENST00000580002 ETNK1Q9HBU6 452 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 ATP13A1Q9HD20 1204 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 HPS4Q9NQG7 708 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 DONSONQ9NYP3 566 aa25.64■■□□□ 1.69
SHMT1-207ENST00000580002 TTC24A2A3L6 582 aaPredicted RBP25.63■■□□□ 1.69
SHMT1-207ENST00000580002 PRAMEF11O60813 436 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 HLA-FP30511 346 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 ETFBP38117 255 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 DRG2P55039 364 aaKnown RBP25.63■■□□□ 1.69
SHMT1-207ENST00000580002 HLTFQ14527 1009 aaKnown RBP eCLIP25.63■■□□□ 1.69
SHMT1-207ENST00000580002 TEX44Q53QW1 395 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 LINGO4Q6UY18 593 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 OTOP3Q7RTS5 596 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 C12orf40Q86WS4 652 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 FIBINQ8TAL6 211 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 CPT1BQ92523 772 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 SNF8Q96H20 258 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 GORASP1Q9BQQ3 440 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 RETREG1Q9H6L5 497 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 SP110Q9HB58 689 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 PDFQ9HBH1 243 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 RAB6BQ9NRW1 208 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 DENND4AQ7Z401 1863 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 CHD5Q8TDI0 1954 aa25.63■■□□□ 1.69
SHMT1-207ENST00000580002 CBX4O00257 560 aa25.62■■□□□ 1.69
SHMT1-207ENST00000580002 DNALI1O14645 258 aaPredicted RBP25.62■■□□□ 1.69
SHMT1-207ENST00000580002 MBTPS2O43462 519 aa25.62■■□□□ 1.69
SHMT1-207ENST00000580002 MESP2Q0VG99 397 aa25.62■■□□□ 1.69
SHMT1-207ENST00000580002 NAIF1Q69YI7 327 aaPredicted RBP25.62■■□□□ 1.69
SHMT1-207ENST00000580002 MFSD6LQ8IWD5 586 aa25.62■■□□□ 1.69
SHMT1-207ENST00000580002 OTUB2Q96DC9 234 aa25.62■■□□□ 1.69
SHMT1-207ENST00000580002 ABCB8Q9NUT2 735 aa25.62■■□□□ 1.69
SHMT1-207ENST00000580002 OBP2AQ9NY56 170 aa25.62■■□□□ 1.69
SHMT1-207ENST00000580002 KLHL8Q9P2G9 620 aaPredicted RBP25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms