RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 N4BP2L1Q5TBK1 243 aaPredicted RBP18.85■□□□□ 0.61
CLN3-237ENST00000569030 FAM72AQ5TYM5 149 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 FAM72DQ6L9T8 149 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 FAM72BQ86X60 149 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 DNAAF5Q86Y56 855 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 MINDY1Q8N5J2 469 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 OR7D4Q8NG98 312 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 SNX19Q92543 992 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 ZYG11BQ9C0D3 744 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 TTYH3Q9C0H2 523 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 PPARGC1AQ9UBK2 798 aaKnown RBP18.85■□□□□ 0.61
CLN3-237ENST00000569030 VPS51Q9UID3 782 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 SARDHQ9UL12 918 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 HS3ST2Q9Y278 367 aa18.85■□□□□ 0.61
CLN3-237ENST00000569030 TMCO5BA8MYB1 307 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 SMAD6O43541 496 aaKnown RBP18.84■□□□□ 0.61
CLN3-237ENST00000569030 RNASEH2AO75792 299 aaKnown RBP18.84■□□□□ 0.61
CLN3-237ENST00000569030 FSBPO95073 299 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 IL1BP01584 269 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 IGHV4-34P06331 123 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 SYPP08247 313 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 SRCP12931 536 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 RRM1P23921 792 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 KRT83P78385 493 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 FANCCQ00597 558 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 BNC1Q01954 994 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 NRG1Q02297 640 aaPredicted RBP18.84■□□□□ 0.61
CLN3-237ENST00000569030 GRIK2Q13002 908 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 ARL13BQ3SXY8 428 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 C6orf118Q5T5N4 469 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 MANEALQ5VSG8 457 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 DNAJC24Q6P3W2 148 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 Q6ZVU0 165 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 ZNF571Q7Z3V5 609 aaPredicted RBP18.84■□□□□ 0.61
CLN3-237ENST00000569030 HDDC3Q8N4P3 179 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 OMDQ99983 421 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 ORAI3Q9BRQ5 295 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 OSBPL2Q9H1P3 480 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 HAUS4Q9H6D7 363 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 AIPL1Q9NZN9 384 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 ADAMTS1Q9UHI8 967 aa18.84■□□□□ 0.61
CLN3-237ENST00000569030 ILVBLA1L0T0 632 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 FAM47DPA6NHR8 397 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 PLK4O00444 970 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 CCP110O43303 1012 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 ADH1BP00325 375 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 PLEKP08567 350 aaPredicted RBP18.83■□□□□ 0.6
CLN3-237ENST00000569030 GOT1P17174 413 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 C5AR1P21730 350 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 DRD3P35462 400 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 NOVA1P51513 510 aaKnown RBP18.83■□□□□ 0.6
CLN3-237ENST00000569030 ZNF143P52747 638 aaPredicted RBP18.83■□□□□ 0.6
CLN3-237ENST00000569030 SEMA3BQ13214 749 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 ASIC2Q16515 512 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 SFMBT2Q5VUG0 894 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 NCEH1Q6PIU2 408 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 LINGO4Q6UY18 593 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 DRC7Q8IY82 874 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 ATP11CQ8NB49 1132 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 MCEEQ96PE7 176 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 C2orf49Q9BVC5 232 aaPredicted RBP18.83■□□□□ 0.6
CLN3-237ENST00000569030 NDFIP2Q9NV92 336 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 DNAAF2Q9NVR5 837 aaKnown RBP18.83■□□□□ 0.6
CLN3-237ENST00000569030 FZD4Q9ULV1 537 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 NEU3Q9UQ49 428 aa18.83■□□□□ 0.6
CLN3-237ENST00000569030 C10orf142B7Z368 130 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 BNIP3LO60238 219 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 OPHN1O60890 802 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 GJB3O75712 270 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 ZMPSTE24O75844 475 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 CSRP1P21291 193 aaKnown RBP18.82■□□□□ 0.6
CLN3-237ENST00000569030 CSNK1EP49674 416 aaKnown RBP18.82■□□□□ 0.6
CLN3-237ENST00000569030 OGDHQ02218 1023 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 SFSWAPQ12872 951 aaKnown RBP18.82■□□□□ 0.6
CLN3-237ENST00000569030 KIAA0895LQ68EN5 471 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 RWDD4Q6NW29 188 aaKnown RBP18.82■□□□□ 0.6
CLN3-237ENST00000569030 LRSAM1Q6UWE0 723 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.82■□□□□ 0.6
CLN3-237ENST00000569030 DCAF4L2Q8NA75 395 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 DEFB124Q8NES8 71 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 OR8D1Q8WZ84 308 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 SPON2Q9BUD6 331 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 EDEM3Q9BZQ6 932 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 EBF2Q9HAK2 575 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 PPM1HQ9ULR3 514 aa18.82■□□□□ 0.6
CLN3-237ENST00000569030 CBX4O00257 560 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 MCF2LO15068 1137 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 LRIG2O94898 1065 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 CTSLP07711 333 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 SKILP12757 684 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 CD59P13987 128 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 CD27P26842 260 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 PBX1P40424 430 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 PRKCIP41743 596 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 GNA12Q03113 381 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 MAMLD1Q13495 774 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 ZSCAN23Q3MJ62 389 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 POM121L1PQ3SYA9 428 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 SCYL2Q6P3W7 929 aa18.81■□□□□ 0.6
CLN3-237ENST00000569030 ZNF783Q6ZMS7 281 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms