RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZNF366Q8N895 744 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 EXD1Q8NHP7 514 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 KCNV2Q8TDN2 545 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 STON1Q9Y6Q2 735 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 NUP205Q92621 2012 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 ZNF318Q5VUA4 2279 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 CD160O95971 181 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 MT-CO1P00395 513 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 ATP5BP06576 529 aaKnown RBP22.28■■□□□ 1.16
SNX1-210ENST00000560260 KRT10P13645 584 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 HLA-EP13747 358 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 SATB1Q01826 763 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 ADCY2Q08462 1091 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 PAFAH1B3Q15102 231 aaKnown RBP22.28■■□□□ 1.16
SNX1-210ENST00000560260 PARP15Q460N3 678 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 MEI1Q5TIA1 1274 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 IL31Q6EBC2 164 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 TMEM92Q6UXU6 159 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 ARHGAP36Q6ZRI8 547 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 C17orf53Q8N3J3 647 aaPredicted RBP22.28■■□□□ 1.16
SNX1-210ENST00000560260 SPEM1Q8N4L4 309 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 PLD5Q8N7P1 536 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 DTWD2Q8NBA8 298 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 ERLEC1Q96DZ1 483 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 ALS2CR12Q96Q35 445 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 GABRG3Q99928 467 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 C2orf49Q9BVC5 232 aaPredicted RBP22.28■■□□□ 1.16
SNX1-210ENST00000560260 TMEM245Q9H330 911 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 MTG2Q9H4K7 406 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 SLCO3A1Q9UIG8 710 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.28■■□□□ 1.16
SNX1-210ENST00000560260 RAD54BQ9Y620 910 aa22.28■■□□□ 1.16
SNX1-210ENST00000560260 hCG_1818297A0A087WSY0 165 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 MIF4GDA9UHW6 222 aaKnown RBP22.27■■□□□ 1.16
SNX1-210ENST00000560260 CBX4O00257 560 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 ZRANB2O95218 330 aaKnown RBP eCLIP22.27■■□□□ 1.16
SNX1-210ENST00000560260 MAP3K6O95382 1288 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 NTSR1P30989 418 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 PAPOLAP51003 745 aaKnown RBP22.27■■□□□ 1.16
SNX1-210ENST00000560260 RWDD2BP57060 319 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 GBE1Q04446 702 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 SERINC3Q13530 473 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 FNDC3BQ53EP0 1204 aaKnown RBP22.27■■□□□ 1.16
SNX1-210ENST00000560260 SLC9A4Q6AI14 798 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 KIAA1211LQ6NV74 962 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 TRIM58Q8NG06 486 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 CCDC26Q8TAB7 109 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 ACDQ96AP0 544 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 RBM41Q96IZ5 413 aaKnown RBP22.27■■□□□ 1.16
SNX1-210ENST00000560260 IER2Q9BTL4 223 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 CD248Q9HCU0 757 aa22.27■■□□□ 1.16
SNX1-210ENST00000560260 SPATA6Q9NWH7 488 aaPredicted RBP22.27■■□□□ 1.16
SNX1-210ENST00000560260 CKAP5Q14008 2032 aa22.27■■□□□ 1.15
SNX1-210ENST00000560260 A0A1W2PQF6 199 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 K7ERQ8 282 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 KDELR3O43731 214 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 SRPRAP08240 638 aaKnown RBP22.26■■□□□ 1.15
SNX1-210ENST00000560260 PYGMP11217 842 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 ETFBP38117 255 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 SULT2A1Q06520 285 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 SLC10A2Q12908 348 aaPredicted RBP22.26■■□□□ 1.15
SNX1-210ENST00000560260 ZNF211Q13398 564 aaPredicted RBP22.26■■□□□ 1.15
SNX1-210ENST00000560260 HSF5Q4G112 596 aaPredicted RBP22.26■■□□□ 1.15
SNX1-210ENST00000560260 SERPINA13PQ6UXR4 307 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 LEKR1Q6ZMV7 388 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 SYT13Q7L8C5 426 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 RFX6Q8HWS3 928 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 RCOR2Q8IZ40 523 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 MAML2Q8IZL2 1156 aaPredicted RBP22.26■■□□□ 1.15
SNX1-210ENST00000560260 LZTR1Q8N653 840 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 PDFQ9HBH1 243 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 DONSONQ9NYP3 566 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 HS3ST2Q9Y278 367 aa22.26■■□□□ 1.15
SNX1-210ENST00000560260 TTC34A8MYJ7 566 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 J3KR12 359 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 DFFAO00273 331 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 SMAD6O43541 496 aaKnown RBP22.25■■□□□ 1.15
SNX1-210ENST00000560260 SRCP12931 536 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 HOXB2P14652 356 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 DYNLT1P63172 113 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 PPP2R5EQ16537 467 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 ODF2Q5BJF6 829 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 EOGTQ5NDL2 527 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 KAZNQ674X7 775 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 NPNTQ6UXI9 565 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 TRMT11Q7Z4G4 463 aaKnown RBP22.25■■□□□ 1.15
SNX1-210ENST00000560260 CCDC50Q8IVM0 306 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 SH2D3CQ8N5H7 860 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 PRMT8Q9NR22 394 aaPredicted RBP22.25■■□□□ 1.15
SNX1-210ENST00000560260 SLC25A13Q9UJS0 675 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 PLA2G4CQ9UP65 541 aa22.25■■□□□ 1.15
SNX1-210ENST00000560260 ARHGAP42A6NI28 874 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 K7ESF4 209 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 NPC1O15118 1278 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 ATG13O75143 517 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 VAV1P15498 845 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 SERPINB6P35237 376 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 SERPINH1P50454 418 aaKnown RBP22.24■■□□□ 1.15
SNX1-210ENST00000560260 VASPP50552 380 aaPredicted RBP22.24■■□□□ 1.15
SNX1-210ENST00000560260 CRY1Q16526 586 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms