RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 NR4A1P22736 598 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 GSTM2P28161 218 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 CTNNA1P35221 906 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 GJC1P36383 396 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 CPOXP36551 454 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 UBA7P41226 1012 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 CDH8P55286 799 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 WDR5P61964 334 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 PRPF4BQ13523 1007 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 BMPR2Q13873 1038 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 MYBPC2Q14324 1141 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 CRYMQ14894 314 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 TAF11Q15544 211 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 CNGA3Q16281 694 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 TXNRD1Q16881 649 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 PLEKHS1Q5SXH7 462 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 HECTD3Q5T447 861 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 GLB1LQ6UWU2 654 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 C17orf99Q6UX52 265 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 CHST9Q7L1S5 443 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 TMEM200AQ86VY9 491 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 GALNT13Q8IUC8 556 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 ADGRF2Q8IZF7 708 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 CNPY4Q8N129 248 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 GHDCQ8N2G8 530 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 LNX2Q8N448 690 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 C12orf76Q8N812 135 aaPredicted RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 RP9Q8TA86 221 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 GABPB2Q8TAK5 448 aaPredicted RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 POMGNT1Q8WZA1 660 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 HSPH1Q92598 858 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 SMARCE1Q969G3 411 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 RFKQ969G6 155 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 FUBP1Q96AE4 644 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 EDC3Q96F86 508 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 PGBD1Q96JS3 809 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 PBKQ96KB5 322 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 FYTTD1Q96QD9 318 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 OR10A4Q9H209 315 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 SFXN1Q9H9B4 322 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 C20orf141Q9NUB4 165 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 TBCCD1Q9NVR7 557 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 TESQ9UGI8 421 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 CDH22Q9UJ99 828 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 INTS6Q9UL03 887 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 PKP3Q9Y446 797 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 FAM169AQ9Y6X4 670 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 C17orf113A0A1B0GUU1 675 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 A0A1W2PQF6 199 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 WDR27A2RRH5 827 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 BTBD18B2RXH4 712 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 EIF3CLB5ME19 914 aaKnown RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 PRYO14603 147 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 FYB1O15117 783 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 LIASO43766 372 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 ZNF623O75123 536 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 CNTN5O94779 1100 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 TJP3O95049 919 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 OR2C1O95371 312 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 ITGAMP11215 1152 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 BMP7P18075 431 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 CDH2P19022 906 aaPredicted RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 TYK2P29597 1187 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 FMO4P31512 558 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 CYP2C18P33260 490 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 CLK3P49761 638 aaKnown RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 PPP5CP53041 499 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 COPB1P53618 953 aaKnown RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 OAZ1P54368 228 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 UBXN2AP68543 259 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 GUCY1B3Q02153 619 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 FRG1Q14331 258 aaKnown RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 RNASE12Q5GAN4 147 aaKnown RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 ARL13AQ5H913 290 aaPredicted RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 RAB41Q5JT25 222 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 C1orf141Q5JVX7 400 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 GKAP1Q5VSY0 366 aaPredicted RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 SLC30A9Q6PML9 568 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 FAM83HQ6ZRV2 1179 aaPredicted RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 DENND5BQ6ZUT9 1274 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 PARS2Q7L3T8 475 aaKnown RBP3.34□□□□□ -1.87
TRAV28-201ENST00000557548 KDELC2Q7Z4H8 507 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 GALNTL5Q7Z4T8 443 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 TADA2BQ86TJ2 420 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 SNX32Q86XE0 403 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 LINC00346Q8IVM7 164 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 SFTPA1Q8IWL2 248 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 CPXM2Q8N436 756 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 ADPRHL1Q8NDY3 354 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 SETD9Q8NE22 299 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 ABHD11Q8NFV4 315 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 GPR150Q8NGU9 434 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 ASB10Q8WXI3 467 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 TFAP2BQ92481 460 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 FAM149B1Q96BN6 582 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 SPATA17Q96L03 361 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 SORCS2Q96PQ0 1159 aa3.34□□□□□ -1.87
TRAV28-201ENST00000557548 ADOQ96SZ5 270 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms