RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ABHD10Q9NUJ1 306 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 NDFIP2Q9NV92 336 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 TMEM248Q9NWD8 314 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 GPATCH2LQ9NWQ4 482 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 DLL3Q9NYJ7 618 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 PATE3B3GLJ2 98 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 K7ERQ8 282 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 CBX4O00257 560 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 MID1O15344 667 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 GDF9O60383 454 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 FOXD2O60548 495 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-219ENST00000555563 RNASEH1O60930 286 aaKnown RBP14.05□□□□□ -0.16
SHMT2-219ENST00000555563 LRCH4O75427 683 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 MT-CO1P00395 513 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 TPM1P09493 284 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 SRCP12931 536 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 EPHB2P29323 1055 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 OXTRP30559 389 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 PSMD8P48556 350 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 GFPT1Q06210 699 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-219ENST00000555563 CST6Q15828 149 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 ACCSLQ4AC99 568 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 AASDHQ4L235 1098 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-219ENST00000555563 CCDC122Q5T0U0 273 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 DAB2IPQ5VWQ8 1189 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 PEAR1Q5VY43 1037 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-219ENST00000555563 CYP4V2Q6ZWL3 525 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-219ENST00000555563 SYT12Q8IV01 421 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 OR8K1Q8NGG5 319 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 ZNF419Q96HQ0 510 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-219ENST00000555563 FAM129BQ96TA1 746 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 EPAS1Q99814 870 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 SPON2Q9BUD6 331 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 SNRNP25Q9BV90 132 aaKnown RBP14.05□□□□□ -0.16
SHMT2-219ENST00000555563 GPR174Q9BXC1 333 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 ATP13A1Q9HD20 1204 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 RXFP3Q9NSD7 469 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 TMEM74BQ9NUR3 256 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 SERGEFQ9UGK8 458 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 DNAI1Q9UI46 699 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 PILRBQ9UKJ0 227 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 AP4E1Q9UPM8 1137 aa14.05□□□□□ -0.16
SHMT2-219ENST00000555563 DNAH14Q0VDD8 3507 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 CHD5Q8TDI0 1954 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-219ENST00000555563 A0A1W2PP55 124 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 MEI4A8MW99 385 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 PRR5-ARHGAP8B1AHC4 643 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 SMAD6O43541 496 aaKnown RBP14.04□□□□□ -0.16
SHMT2-219ENST00000555563 CREB3O43889 395 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 ZMPSTE24O75844 475 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 RNF8O76064 485 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 CYP1A2P05177 515 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 MIPP30301 263 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 ACSL1P33121 698 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 ACVRL1P37023 503 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 ARF5P84085 180 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 ARHGAP8P85298 464 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 DLG2Q15700 870 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 CA9Q16790 459 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 RSPO4Q2I0M5 234 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-219ENST00000555563 IL31Q6EBC2 164 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 C22orf39Q6P5X5 142 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 RTL3Q8N8U3 475 aaKnown RBP14.04□□□□□ -0.16
SHMT2-219ENST00000555563 ATP11CQ8NB49 1132 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 NETO1Q8TDF5 533 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 ARHGEF26Q96DR7 871 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 TRIM5Q9C035 493 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 RBSNQ9H1K0 784 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 RETREG1Q9H6L5 497 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 ZNHIT6Q9NWK9 470 aaKnown RBP14.04□□□□□ -0.16
SHMT2-219ENST00000555563 PCSK1NQ9UHG2 260 aa14.04□□□□□ -0.16
SHMT2-219ENST00000555563 CDV3Q9UKY7 258 aaKnown RBP14.04□□□□□ -0.16
SHMT2-219ENST00000555563 SSU72P8A0A1W2PR75 194 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 LNP1A1A4G5 178 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 KHNYNO15037 678 aaKnown RBP14.03□□□□□ -0.16
SHMT2-219ENST00000555563 BNIP3LO60238 219 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 PRPSAP2O60256 369 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 RAMP2O60895 175 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 IL1BP01584 269 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 SLC8A1P32418 973 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 HOXD12P35452 270 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 ETFBP38117 255 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 DPP6P42658 865 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 SERPINH1P50454 418 aaKnown RBP14.03□□□□□ -0.16
SHMT2-219ENST00000555563 CLCN6P51797 869 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 METAP1P53582 386 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 GALCP54803 685 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 ADKP55263 362 aaKnown RBP14.03□□□□□ -0.16
SHMT2-219ENST00000555563 TPI1P60174 286 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 MAPK8IP2Q13387 824 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-219ENST00000555563 SLC18A3Q16572 532 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 ASTE1Q2TB18 679 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-219ENST00000555563 TRIM61Q5EBN2 209 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 USP30Q70CQ3 517 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 AADATQ8N5Z0 425 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 CADM4Q8NFZ8 388 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 GANCQ8TET4 914 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 OR8D1Q8WZ84 308 aa14.03□□□□□ -0.16
SHMT2-219ENST00000555563 FOXJ1Q92949 421 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms