RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 RBM12Q9NTZ6 932 aaKnown RBP12.52□□□□□ -0.41
SHMT2-209ENST00000553949 DTLQ9NZJ0 730 aa12.52□□□□□ -0.41
SHMT2-209ENST00000553949 VPS51Q9UID3 782 aa12.52□□□□□ -0.41
SHMT2-209ENST00000553949 HCN2Q9UL51 889 aa12.52□□□□□ -0.41
SHMT2-209ENST00000553949 HPCAL4Q9UM19 191 aa12.52□□□□□ -0.41
SHMT2-209ENST00000553949 HEY1Q9Y5J3 304 aa12.52□□□□□ -0.41
SHMT2-209ENST00000553949 RAD54BQ9Y620 910 aa12.52□□□□□ -0.41
SHMT2-209ENST00000553949 TRIOO75962 3097 aa12.52□□□□□ -0.41
SHMT2-209ENST00000553949 CEP104O60308 925 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 RNF40O75150 1001 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 MAP3K6O95382 1288 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 PDGFBP01127 241 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 CHRM1P11229 460 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 PECAM1P16284 738 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 MX2P20592 715 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 KIR2DL1P43626 348 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 NR2C2P49116 596 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 ARF5P84085 180 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 KLF1Q13351 362 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 FZD5Q13467 585 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 CCDC181Q5TID7 509 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 PAPD7Q5XG87 772 aaKnown RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 EGFLAMQ63HQ2 1017 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 CWF19L1Q69YN2 538 aaKnown RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 RETSATQ6NUM9 610 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 LINGO4Q6UY18 593 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 SYT10Q6XYQ8 523 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 ARHGAP36Q6ZRI8 547 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 SLC13A5Q86YT5 568 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 CCDC105Q8IYK2 499 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 SYNPOQ8N3V7 929 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 ATPAF2Q8N5M1 289 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 FLCNQ8NFG4 579 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 PJA1Q8NG27 643 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 P3H4Q92791 437 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 PBKQ96KB5 322 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 MRGPRX3Q96LB0 322 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 OLFM3Q96PB7 478 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 OSBPL9Q96SU4 736 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 EPHX3Q9H6B9 360 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 THAP10Q9P2Z0 257 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 SAE1Q9UBE0 346 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-209ENST00000553949 PLA2G4CQ9UP65 541 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 ERVW-1Q9UQF0 538 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 SIT1Q9Y3P8 196 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 F5P12259 2224 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 TTC28Q96AY4 2481 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 KIAA1549LQ6ZVL6 1849 aa12.51□□□□□ -0.41
SHMT2-209ENST00000553949 CXorf51AA0A1B0GTR3 108 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 TCRBV7S2A1N4TA0A589 114 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 ZSCAN5CA6NGD5 496 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 J3KR12 359 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 APOC4-APOC2K7ER74 178 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 NCAM2O15394 837 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 PRAMEF11O60813 436 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 MT-CO1P00395 513 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 APOC2P02655 101 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 SRPRAP08240 638 aaKnown RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 HNRNPLP14866 589 aaKnown RBP eCLIP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 PRLRP16471 622 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 TCP1P17987 556 aaKnown RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 CASQ1P31415 396 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 TIE1P35590 1138 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 GARSP41250 739 aaKnown RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 STK19P49842 368 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 MRPS21P82921 87 aaKnown RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 PDK1Q15118 436 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 E2F5Q15329 346 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 C2orf27AQ580R0 203 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 BZW1Q7L1Q6 419 aaKnown RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 LRRC49Q8IUZ0 686 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 ZNF513Q8N8E2 541 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 USP33Q8TEY7 942 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 COG1Q8WTW3 980 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 CLDN23Q96B33 292 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 HAUS1Q96CS2 278 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 RPL10LQ96L21 214 aaKnown RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 ACOX2Q99424 681 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 SP110Q9HB58 689 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 PDFQ9HBH1 243 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 ZDHHC4Q9NPG8 344 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 IPO11Q9UI26 975 aaKnown RBP12.5□□□□□ -0.41
SHMT2-209ENST00000553949 SLC25A13Q9UJS0 675 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 HS3ST2Q9Y278 367 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 DOCK4Q8N1I0 1966 aa12.5□□□□□ -0.41
SHMT2-209ENST00000553949 CES2O00748 559 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 PPP1R12AO14974 1030 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 NPC1O15118 1278 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 MAFKO60675 156 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 CD160O95971 181 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 FGGP02679 453 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 TUBB4AP04350 444 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 SERPINH1P50454 418 aaKnown RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 VASPP50552 380 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 GEMIN4P57678 1058 aaKnown RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 ST8SIA6P61647 398 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 OTUD4Q01804 1114 aaKnown RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 IL10RBQ08334 325 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 SLC20A2Q08357 652 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 ZNF234Q14588 700 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms