RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ITIH4Q14624 930 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 PDK4Q16654 411 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 OTOP3Q7RTS5 596 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 ZNF461Q8TAF7 563 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 TMEM169Q96HH4 297 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 CABS1Q96KC9 395 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 IPO11Q9UI26 975 aaKnown RBP26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 DNMT3LQ9UJW3 386 aa26.87■■□□□ 1.89
CCDC88C-205ENST00000553403 GOLGA6L7A0A1B0GV03 622 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 UGT1A9O60656 530 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 MGAT5Q09328 741 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 SEPT7Q16181 437 aaKnown RBP26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 LRRC26Q2I0M4 334 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 RAP1GAP2Q684P5 730 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 FBXL22Q6P050 247 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 LVRNQ6Q4G3 990 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 TIFABQ6ZNK6 161 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 TCP10LQ8TDR4 215 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 ELAC2Q9BQ52 826 aaKnown RBP26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 UGT1A7Q9HAW7 530 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 UGT1A10Q9HAW8 530 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 UGT1A8Q9HAW9 530 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 FGFR1OP2Q9NVK5 253 aa26.86■■□□□ 1.89
CCDC88C-205ENST00000553403 GOLGA8RI6L899 631 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 LPXNO60711 386 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 USP12O75317 370 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 SEC24AO95486 1093 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 HMBSP08397 361 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 ALADP13716 330 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 ATP5C1P36542 298 aaKnown RBP26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 CCNFP41002 786 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 GEMP55040 296 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 CDH17Q12864 832 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 DNAJC3Q13217 504 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 OLIG2Q13516 323 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 KLHDC10Q6PID8 442 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 TMEM135Q86UB9 458 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 ANKS4BQ8N8V4 417 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 KLF6Q99612 283 aaPredicted RBP26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 IL22Q9GZX6 179 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 RBM22Q9NW64 420 aaKnown RBP eCLIP26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 MKS1Q9NXB0 559 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 RPS6KL1Q9Y6S9 549 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 FAM237BA0A1B0GVD1 139 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 C2CD2LO14523 706 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 SNX3O60493 162 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 USP1O94782 785 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 KIAA0754O94854 1291 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 PYGBP11216 843 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 ALFQ53S48 1182 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 IGSF8Q969P0 613 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 GRAMD1AQ96CP6 724 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 SPG21Q9NZD8 308 aa26.85■■□□□ 1.89
CCDC88C-205ENST00000553403 CNTN5O94779 1100 aa26.84■■□□□ 1.89
CCDC88C-205ENST00000553403 DEFB103AP81534 67 aa26.84■■□□□ 1.89
CCDC88C-205ENST00000553403 HNRNPDQ14103 355 aaKnown RBP26.84■■□□□ 1.89
CCDC88C-205ENST00000553403 CHSY1Q86X52 802 aa26.84■■□□□ 1.89
CCDC88C-205ENST00000553403 MYRFLQ96LU7 910 aa26.84■■□□□ 1.89
CCDC88C-205ENST00000553403 RETREG1Q9H6L5 497 aa26.84■■□□□ 1.89
CCDC88C-205ENST00000553403 GRID1Q9ULK0 1009 aa26.84■■□□□ 1.89
CCDC88C-205ENST00000553403 NYNRINQ9P2P1 1898 aaKnown RBP26.84■■□□□ 1.89
CCDC88C-205ENST00000553403 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 ZNF840PA6NDX5 716 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 KIAA0355O15063 1070 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 OAS1P00973 400 aaKnown RBP26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 HLA-DQB2P05538 268 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 HMGA1P17096 107 aaKnown RBP26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 MAPKAPK2P49137 400 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 WDR5P61964 334 aaKnown RBP26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 IFT88Q13099 833 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 BTG3Q14201 252 aaPredicted RBP26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 HECTD3Q5T447 861 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 TFAP2DQ7Z6R9 452 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 DDX53Q86TM3 631 aaKnown RBP26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 HMCESQ96FZ2 354 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 CERS2Q96G23 380 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 PAWRQ96IZ0 340 aaKnown RBP26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 ZNF512Q96ME7 567 aaPredicted RBP26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 TBL1YQ9BQ87 522 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 VPS11Q9H270 941 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 ZNF212Q9UDV6 495 aa26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 MRPL42Q9Y6G3 142 aaKnown RBP26.83■■□□□ 1.89
CCDC88C-205ENST00000553403 DOCK4Q8N1I0 1966 aa26.83■■□□□ 1.88
CCDC88C-205ENST00000553403 RFPL1O75677 317 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 NEBLO76041 1014 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 PEX11BO96011 259 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 TACR2P21452 398 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 RENBPP51606 427 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 RAB33AQ14088 237 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 C5orf22Q49AR2 442 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 ANKRD20A4Q4UJ75 823 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 NADSYN1Q6IA69 706 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 PACS1Q6VY07 963 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 CCDC117Q8IWD4 279 aaPredicted RBP26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 UNC5BQ8IZJ1 945 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 SERBP1Q8NC51 408 aaKnown RBP eCLIP26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 LRRC8CQ8TDW0 803 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 ZNF419Q96HQ0 510 aaPredicted RBP26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 RPRD1AQ96P16 312 aaPredicted RBP26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 FCRL3Q96P31 734 aaPredicted RBP26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms