RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PTPN9P43378 593 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CLCN2P51788 898 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 APOFQ13790 326 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PDK1Q15118 436 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CNGA3Q16281 694 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 EML3Q32P44 896 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 HSP90AA5PQ58FG0 334 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 OTUD1Q5VV17 481 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 METTL21CQ5VZV1 264 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 DLK2Q6UY11 383 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PTAR1Q7Z6K3 402 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 EXOC8Q8IYI6 725 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 GALNT4Q8N4A0 578 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CHST13Q8NET6 341 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 GRIN3AQ8TCU5 1115 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 MFSD3Q96ES6 412 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PRPF18Q99633 342 aaKnown RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 NUF2Q9BZD4 464 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PRDM12Q9H4Q4 367 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 ZNF385DQ9H6B1 395 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PRDM16Q9HAZ2 1276 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 HOXC10Q9NYD6 342 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PTTG2Q9NZH5 202 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 C6orf203Q9P0P8 240 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 ZDHHC2Q9UIJ5 367 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 HEMK1Q9Y5R4 338 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CDY2AQ9Y6F7 541 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CDY1Q9Y6F8 540 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 WDR90Q96KV7 1748 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 hCG_2014768A0A024R1R8 64 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PRSS51A0A1B0GVH4 220 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 C7orf72A4D263 438 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 RGSL1A5PLK6 1076 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 C19orf81C9J6K1 198 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 H3BSA7 217 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TRIM13O60858 407 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 RNASEH2AO75792 299 aaKnown RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 C22orf31O95567 290 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 VTNP04004 478 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SRGAP2BP0DMP2 458 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 MCF2P10911 925 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ENO3P13929 434 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SLC5A2P31639 672 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 LIMK2P53671 638 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 RBP5P82980 135 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 NSUN2Q08J23 767 aaKnown RBP eCLIP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FLOT2Q14254 428 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 MYBPC3Q14896 1274 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CCDC153Q494R4 210 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CELF3Q5SZQ8 465 aaKnown RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 GJC2Q5T442 439 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 GRTP1Q5TC63 336 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 LBX2Q6XYB7 198 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SLC26A9Q7LBE3 791 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PLPPR4Q7Z2D5 763 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FBXO16Q8IX29 292 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 LSMEM2Q8N112 164 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TMEM102Q8N9M5 508 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 KYQ8NBH2 561 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 BHLHE22Q8NFJ8 381 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SLC7A14Q8TBB6 771 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF669Q96BR6 464 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 LENG1Q96BZ8 264 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CNDP1Q96KN2 507 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF512Q96ME7 567 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CATSPER2Q96P56 530 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CPNE1Q99829 537 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 APOL2Q9BQE5 337 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FERMT1Q9BQL6 677 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 NAT9Q9BTE0 207 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 MCMBPQ9BTE3 642 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SLC2A11Q9BYW1 496 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 VPS33BQ9H267 617 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 Q9H521 79 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FAM124BQ9H5Z6 455 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ASB7Q9H672 318 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 IL21Q9HBE4 155 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 GALNT8Q9NY28 637 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TMCO1Q9UM00 188 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CROCCQ5TZA2 2017 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SBF1O95248 1867 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PLXNA1Q9UIW2 1896 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 SYNJ2BP-COX16A0A087WUM0 186 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CCDC78A2IDD5 438 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CCDC160A6NGH7 325 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TMEM233B4DJY2 109 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 FAM72CH0Y354 149 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 I6L893 689 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 NOP56O00567 594 aaKnown RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ACOT8O14734 319 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PIGNO95427 931 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CAPNS1P04632 268 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 POLBP06746 335 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 PDGFRBP09619 1106 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TGFB3P10600 412 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 THRAP10827 490 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 CDK4P11802 303 aa5.52□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF26P17031 533 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 NELFEP18615 380 aaKnown RBP5.52□□□□□ -1.53
LIMA1-212ENST00000552491 TFEBP19484 476 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms