RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 APBB3O95704 486 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 KRT1P04264 644 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 CD48P09326 243 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 SP9P0CG40 484 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 GLDCP23378 1020 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 KDELR1P24390 212 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 MMRN1Q13201 1228 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 DPYSQ14117 519 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 DPYSL3Q14195 570 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 ODF2Q5BJF6 829 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 HEATR6Q6AI08 1181 aaKnown RBP16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 KIAA1211LQ6NV74 962 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 KDM1BQ8NB78 822 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 FAM71BQ8TC56 605 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 KIAA1524Q8TCG1 905 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 RAPGEF5Q92565 580 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 MYO19Q96H55 970 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 CELF6Q96J87 481 aaKnown RBP16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 ZNF830Q96NB3 372 aaPredicted RBP16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 TMEM245Q9H330 911 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 NOL6Q9H6R4 1146 aaKnown RBP16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 DDX56Q9NY93 547 aaKnown RBP16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 HPCAL4Q9UM19 191 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 GUCA1BQ9UMX6 200 aa16.61■□□□□ 0.25
CHMP1A-209ENST00000550872 TTC34A8MYJ7 566 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 PSTPIP1O43586 416 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 ZMPSTE24O75844 475 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 IL4RP24394 825 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 HOXA6P31267 233 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 PXNP49023 591 aaPredicted RBP16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 NDST2P52849 883 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 PARP15Q460N3 678 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 ACCSLQ4AC99 568 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 ANO7Q6IWH7 933 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 RETSATQ6NUM9 610 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 TMCO3Q6UWJ1 677 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 PGBD3Q8N328 593 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 RNF10Q8N5U6 811 aaKnown RBP16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 ZNF670Q9BS34 389 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 ACE2Q9BYF1 805 aaPredicted RBP16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 MTG2Q9H4K7 406 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 ETNK2Q9NVF9 386 aa16.6■□□□□ 0.25
CHMP1A-209ENST00000550872 MYO15AQ9UKN7 3530 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 GRID2IPA4D2P6 1211 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 ARHGAP42A6NI28 874 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 DCLK1O15075 740 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 PALMO75781 387 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 MT-CO1P00395 513 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 TDGF1P13385 188 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 FNTBP49356 437 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 VASPP50552 380 aaPredicted RBP16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 NRLP54845 237 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 SLC20A2Q08357 652 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 DMWDQ09019 674 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 ZNF528Q3MIS6 628 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 ANKRD20A8PQ5CZ79 823 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 LINGO4Q6UY18 593 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 LZTR1Q8N653 840 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 ATP11CQ8NB49 1132 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 HMGB4Q8WW32 186 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 RNF25Q96BH1 459 aaPredicted RBP16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 HMCESQ96FZ2 354 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 FAM126AQ9BYI3 521 aaPredicted RBP16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 SLC39A8Q9C0K1 460 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 KLC2Q9H0B6 622 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 LRRC19Q9H756 370 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 BCCIPQ9P287 314 aaKnown RBP eCLIP16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 MFHAS1Q9Y4C4 1052 aa16.59■□□□□ 0.25
CHMP1A-209ENST00000550872 CHD5Q8TDI0 1954 aa16.58■□□□□ 0.25
CHMP1A-209ENST00000550872 EDDM13A0A1B0GTR0 161 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 DFFAO00273 331 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 AXIN1O15169 862 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 KDELR3O43731 214 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 ATP9BO43861 1147 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 SRCP12931 536 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 PAPOLAP51003 745 aaKnown RBP16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 CCDC173Q0VFZ6 552 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 SERINC3Q13530 473 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 CAMK2GQ13555 558 aaPredicted RBP16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 DLG2Q15700 870 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 HNRNPA1L2Q32P51 320 aaKnown RBP16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 SYCE1Q8N0S2 351 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 SH2D3CQ8N5H7 860 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 NPWQ8N729 165 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 LRRC57Q8N9N7 239 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 NETO2Q8NC67 525 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 PCDH19Q8TAB3 1148 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 MAK16Q9BXY0 300 aaKnown RBP16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 KCNF1Q9H3M0 494 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 CD248Q9HCU0 757 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 LZTFL1Q9NQ48 299 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 PRSS16Q9NQE7 514 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 AMFRQ9UKV5 643 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 HS3ST2Q9Y278 367 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 PPP2R2CQ9Y2T4 447 aa16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 ZFHX2Q9C0A1 2572 aaPredicted RBP16.58■□□□□ 0.24
CHMP1A-209ENST00000550872 TARSL2A2RTX5 802 aaKnown RBP16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 K7ERQ8 282 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 SMAD6O43541 496 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms