RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 ATG2BQ96BY7 2078 aa14.08□□□□□ -0.15
PTCH1-213ENST00000546820 GOLGA6L9A6NEM1 432 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 SGK1O00141 431 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 DCLK1O15075 740 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 EPHX1P07099 455 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 HOXB2P14652 356 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 ACVRL1P37023 503 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 IL12RB1P42701 662 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 WASP42768 502 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 CLCN6P51797 869 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 NRLP54845 237 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 ENPP2Q13822 863 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 TFDP2Q14188 446 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 CRY1Q16526 586 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 PTPRNQ16849 979 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 ACCSLQ4AC99 568 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 TFDP3Q5H9I0 405 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 RFX6Q8HWS3 928 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 CCDC50Q8IVM0 306 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 ATP11CQ8NB49 1132 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 PCDH19Q8TAB3 1148 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 FAF2Q96CS3 445 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 RPL10LQ96L21 214 aaKnown RBP14.08□□□□□ -0.16
PTCH1-213ENST00000546820 ACOX2Q99424 681 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 PSMB7Q99436 277 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 GABRG3Q99928 467 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 SLC39A8Q9C0K1 460 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 TMEM245Q9H330 911 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 LRRC19Q9H756 370 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 VPS51Q9UID3 782 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 HCN2Q9UL51 889 aa14.08□□□□□ -0.16
PTCH1-213ENST00000546820 FARP1Q9Y4F1 1045 aaPredicted RBP14.08□□□□□ -0.16
PTCH1-213ENST00000546820 MYO18AQ92614 2054 aaKnown RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 TARSL2A2RTX5 802 aaKnown RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 C3orf70A6NLC5 250 aaPredicted RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 WASH3PC4AMC7 463 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 DFFAO00273 331 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 APOL1O14791 398 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 GALR2O43603 387 aaPredicted RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 SNAP91O60641 907 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 PAPSS2O95340 614 aaPredicted RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 FTCDO95954 541 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 CTSOP43234 321 aaPredicted RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 PEX5P50542 639 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 PAPOLAP51003 745 aaKnown RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 CSTF1Q05048 431 aaKnown RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 SERINC3Q13530 473 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 PAFAH1B3Q15102 231 aaKnown RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 PKN3Q6P5Z2 889 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 MFSD7Q6UXD7 560 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 SPOCD1Q6ZMY3 1216 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 BZW1Q7L1Q6 419 aaKnown RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 CASKIN2Q8WXE0 1202 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 HMCESQ96FZ2 354 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 CELF6Q96J87 481 aaKnown RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 NOL6Q9H6R4 1146 aaKnown RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 ZDHHC4Q9NPG8 344 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 TRMT1Q9NXH9 659 aaKnown RBP14.07□□□□□ -0.16
PTCH1-213ENST00000546820 SLCO3A1Q9UIG8 710 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 FBXO4Q9UKT5 387 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 HS3ST2Q9Y278 367 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 CAPN6Q9Y6Q1 641 aa14.07□□□□□ -0.16
PTCH1-213ENST00000546820 EDDM13A0A1B0GTR0 161 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 ANTXRLA6NF34 631 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 ATP9BO43861 1147 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 KIF5CO60282 957 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 RNASEH1O60930 286 aaKnown RBP14.06□□□□□ -0.16
PTCH1-213ENST00000546820 ADAM23O75077 832 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 ZMPSTE24O75844 475 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 CHRM1P11229 460 aaPredicted RBP14.06□□□□□ -0.16
PTCH1-213ENST00000546820 MX2P20592 715 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 HOXA6P31267 233 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 CDKN2BP42772 138 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 NR2C2P49116 596 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 NUMBP49757 651 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 SATB1Q01826 763 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 RPS6KA1Q15418 735 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 DLG2Q15700 870 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 HNRNPA1L2Q32P51 320 aaKnown RBP14.06□□□□□ -0.16
PTCH1-213ENST00000546820 AFMIDQ63HM1 303 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 KAZNQ674X7 775 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 REXO1L1PQ8IX06 675 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 SH2D3CQ8N5H7 860 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 TSTD1Q8NFU3 115 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 NSMCE1Q8WV22 266 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 KRT35Q92764 455 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 HES6Q96HZ4 224 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 MRGPRX3Q96LB0 322 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 CCDC114Q96M63 670 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 FAM126AQ9BYI3 521 aaPredicted RBP14.06□□□□□ -0.16
PTCH1-213ENST00000546820 CEP44Q9C0F1 390 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 KLC2Q9H0B6 622 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 IRF2BPLQ9H1B7 796 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 FBRSQ9HAH7 460 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 SP110Q9HB58 689 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 ETNK2Q9NVF9 386 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 EFR3BQ9Y2G0 817 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 RAD54BQ9Y620 910 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 CUL9Q8IWT3 2517 aa14.06□□□□□ -0.16
PTCH1-213ENST00000546820 TTC34A8MYJ7 566 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms