RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NPY2RP49146 381 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 CDH17Q12864 832 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 TEDDM1Q5T9Z0 273 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 NAPEPLDQ6IQ20 393 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 MIB1Q86YT6 1006 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 TRIM42Q8IWZ5 723 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 DCLK2Q8N568 766 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 PPP1R14CQ8TAE6 165 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 ATP2A3Q93084 1043 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 SERPINB11Q96P15 392 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 TSGA13Q96PP4 275 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 IL22Q9GZX6 179 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 CAB39LQ9H9S4 337 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 HMX1Q9NP08 348 aaPredicted RBP16.64■□□□□ 0.25
COL4A1-204ENST00000543140 IARS2Q9NSE4 1012 aaKnown RBP16.64■□□□□ 0.25
COL4A1-204ENST00000543140 TMEM161AQ9NX61 479 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 ADAM28Q9UKQ2 775 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 ARVCFO00192 962 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 KIF3CO14782 793 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 GSRP00390 522 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 HOXC13P31276 330 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 PAPOLAP51003 745 aaKnown RBP16.63■□□□□ 0.25
COL4A1-204ENST00000543140 GRTP1Q5TC63 336 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 FSTL4Q6MZW2 842 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 KYAT3Q6YP21 454 aaKnown RBP16.63■□□□□ 0.25
COL4A1-204ENST00000543140 KCNMB4Q86W47 210 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 ACMSDQ8TDX5 336 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 RBBP8Q99708 897 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 SNX15Q9NRS6 342 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 RBM22Q9NW64 420 aaKnown RBP eCLIP16.63■□□□□ 0.25
COL4A1-204ENST00000543140 PCDHB7Q9Y5E2 793 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 ENPP3O14638 875 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 GLRA3O75311 464 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 PMPCBO75439 489 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 SELPP16109 830 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 NUMBP49757 651 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 MLLT6P55198 1093 aaPredicted RBP16.63■□□□□ 0.25
COL4A1-204ENST00000543140 OCRLQ01968 901 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 STX3Q13277 289 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 POU6F1Q14863 301 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 DLG2Q15700 870 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 TTC7BQ86TV6 843 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 SLC43A3Q8NBI5 491 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 FUBP3Q96I24 572 aaKnown RBP eCLIP16.63■□□□□ 0.25
COL4A1-204ENST00000543140 C8orf48Q96LL4 319 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 TSEN34Q9BSV6 310 aaKnown RBP16.63■□□□□ 0.25
COL4A1-204ENST00000543140 ATXN3LQ9H3M9 355 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 FBXO44Q9H4M3 255 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 NOD2Q9HC29 1040 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 GLOD4Q9HC38 313 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 TMEM216Q9P0N5 145 aa16.63■□□□□ 0.25
COL4A1-204ENST00000543140 MTO1Q9Y2Z2 717 aaKnown RBP16.63■□□□□ 0.25
COL4A1-204ENST00000543140 BPTFQ12830 3046 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 MATN3O15232 486 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 BIRC5O15392 142 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 HLA-DQB2P05538 268 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 HMBSP08397 361 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 CPB1P15086 417 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 TBX4P57082 545 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 GPNMBQ14956 572 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 PSMD5Q16401 504 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 CTC1Q2NKJ3 1217 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 RTL3Q8N8U3 475 aaKnown RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 ACVR1CQ8NER5 493 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 UTP4Q969X6 686 aaKnown RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 SLC7A6OSQ96CW6 309 aaPredicted RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 C7orf26Q96N11 449 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 FICDQ9BVA6 458 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 FTHL17Q9BXU8 183 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 DCDC2Q9UHG0 476 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 SOX13Q9UN79 622 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 TLR6Q9Y2C9 796 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 MAGEB16A2A368 324 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 PLIN3O60664 434 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 LYPLA1O75608 230 aaPredicted RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 ATP5HO75947 161 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 NEBLO76041 1014 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 SPRP35270 261 aaPredicted RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 PGGT1BP53609 377 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 RSPO2Q6UXX9 243 aaPredicted RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 ALYREFQ86V81 257 aaKnown RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 SUGP1Q8IWZ8 645 aaKnown RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 LZTR1Q8N653 840 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 PXYLP1Q8TE99 480 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 IL12RB2Q99665 862 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 SEPT5Q99719 369 aaPredicted RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 TBL1YQ9BQ87 522 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 LRMDAQ9H2I8 198 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 CRISPLD1Q9H336 500 aa16.62■□□□□ 0.25
COL4A1-204ENST00000543140 AAR2Q9Y312 384 aaKnown RBP16.62■□□□□ 0.25
COL4A1-204ENST00000543140 SYN3O14994 580 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 CNTN5O94779 1100 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 IL1BP01584 269 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 PRKCGP05129 697 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 ZNF33AQ06730 810 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 MGAT5BQ3V5L5 792 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 HSF5Q4G112 596 aaPredicted RBP16.61■□□□□ 0.25
COL4A1-204ENST00000543140 LINC00523Q86TU6 105 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 TNS4Q8IZW8 715 aa16.61■□□□□ 0.25
COL4A1-204ENST00000543140 PLD6Q8N2A8 252 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms