RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 LRRC49Q8IUZ0 686 aa17.52■□□□□ 0.39
LIG1-204ENST00000542460 FLCNQ8NFG4 579 aa17.52■□□□□ 0.39
LIG1-204ENST00000542460 HEY1Q9Y5J3 304 aa17.52■□□□□ 0.39
LIG1-204ENST00000542460 RAD54BQ9Y620 910 aa17.52■□□□□ 0.39
LIG1-204ENST00000542460 NPC1O15118 1278 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 MFSD11O43934 449 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 ZMPSTE24O75844 475 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 HNRNPLP14866 589 aaKnown RBP eCLIP17.51■□□□□ 0.39
LIG1-204ENST00000542460 NUMBP49757 651 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 SEC13P55735 322 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 MRPS21P82921 87 aaKnown RBP17.51■□□□□ 0.39
LIG1-204ENST00000542460 GBE1Q04446 702 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 SLC20A2Q08357 652 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 EMC10Q5UCC4 262 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 RETSATQ6NUM9 610 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 NYAP1Q6ZVC0 841 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 BZW1Q7L1Q6 419 aaKnown RBP17.51■□□□□ 0.39
LIG1-204ENST00000542460 ZSCAN30Q86W11 494 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 TP53INP2Q8IXH6 220 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 ZNF513Q8N8E2 541 aaPredicted RBP17.51■□□□□ 0.39
LIG1-204ENST00000542460 NETO2Q8NC67 525 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 SORCS1Q8WY21 1168 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 PBKQ96KB5 322 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 NAPGQ99747 312 aaPredicted RBP17.51■□□□□ 0.39
LIG1-204ENST00000542460 RBM12Q9NTZ6 932 aaKnown RBP17.51■□□□□ 0.39
LIG1-204ENST00000542460 DTLQ9NZJ0 730 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 VPS51Q9UID3 782 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 KIAA1549LQ6ZVL6 1849 aa17.51■□□□□ 0.39
LIG1-204ENST00000542460 CTAGE9A4FU28 777 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 ZSCAN5CA6NGD5 496 aaPredicted RBP17.5■□□□□ 0.39
LIG1-204ENST00000542460 SNAP91O60641 907 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 RNF40O75150 1001 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 PDGFBP01127 241 aaPredicted RBP17.5■□□□□ 0.39
LIG1-204ENST00000542460 SRPRAP08240 638 aaKnown RBP17.5■□□□□ 0.39
LIG1-204ENST00000542460 MX2P20592 715 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 CXCR5P32302 372 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 SLC10A2Q12908 348 aaPredicted RBP17.5■□□□□ 0.39
LIG1-204ENST00000542460 PTPRNQ16849 979 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 C2orf27AQ580R0 203 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 CCDC181Q5TID7 509 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 CCDC105Q8IYK2 499 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 KDM1BQ8NB78 822 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 CYB5D2Q8WUJ1 264 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 P3H4Q92791 437 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 CLDN23Q96B33 292 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 HERPUD2Q9BSE4 406 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 THAP10Q9P2Z0 257 aaPredicted RBP17.5■□□□□ 0.39
LIG1-204ENST00000542460 SLC25A13Q9UJS0 675 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 HCN2Q9UL51 889 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 SNX12Q9UMY4 172 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 ERVW-1Q9UQF0 538 aa17.5■□□□□ 0.39
LIG1-204ENST00000542460 PRR33A8MZF0 331 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 APOC4-APOC2K7ER74 178 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 APOC2P02655 101 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 GLDCP23378 1020 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 TIE1P35590 1138 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 NNMTP40261 264 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 CTSOP43234 321 aaPredicted RBP17.49■□□□□ 0.39
LIG1-204ENST00000542460 RPS9P46781 194 aaKnown RBP17.49■□□□□ 0.39
LIG1-204ENST00000542460 VASPP50552 380 aaPredicted RBP17.49■□□□□ 0.39
LIG1-204ENST00000542460 GEMIN4P57678 1058 aaKnown RBP17.49■□□□□ 0.39
LIG1-204ENST00000542460 ST8SIA6P61647 398 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 GALNT2Q10471 571 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 EGFLAMQ63HQ2 1017 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 NPNTQ6UXI9 565 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 TRMT11Q7Z4G4 463 aaKnown RBP17.49■□□□□ 0.39
LIG1-204ENST00000542460 ATPAF2Q8N5M1 289 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 USP33Q8TEY7 942 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 RPL10LQ96L21 214 aaKnown RBP17.49■□□□□ 0.39
LIG1-204ENST00000542460 OSBPL9Q96SU4 736 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 IPO11Q9UI26 975 aaKnown RBP17.49■□□□□ 0.39
LIG1-204ENST00000542460 HCN4Q9Y3Q4 1203 aa17.49■□□□□ 0.39
LIG1-204ENST00000542460 ANTXRLA6NF34 631 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 CEP104O60308 925 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 PRAMEF11O60813 436 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 MAP3K6O95382 1288 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 TUBB4AP04350 444 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 CHRM1P11229 460 aaPredicted RBP17.48■□□□□ 0.39
LIG1-204ENST00000542460 PRLRP16471 622 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 GARSP41250 739 aaKnown RBP17.48■□□□□ 0.39
LIG1-204ENST00000542460 CLCN5P51795 746 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 ARF5P84085 180 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 IL10RBQ08334 325 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 KLF1Q13351 362 aaPredicted RBP17.48■□□□□ 0.39
LIG1-204ENST00000542460 ZNF234Q14588 700 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 PDK1Q15118 436 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 HSF5Q4G112 596 aaPredicted RBP17.48■□□□□ 0.39
LIG1-204ENST00000542460 PAPD7Q5XG87 772 aaKnown RBP17.48■□□□□ 0.39
LIG1-204ENST00000542460 CWF19L1Q69YN2 538 aaKnown RBP17.48■□□□□ 0.39
LIG1-204ENST00000542460 SLC13A5Q86YT5 568 aaPredicted RBP17.48■□□□□ 0.39
LIG1-204ENST00000542460 CHPFQ8IZ52 775 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 PBXIP1Q96AQ6 731 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 MRGPRX3Q96LB0 322 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 C16orf45Q96MC5 204 aaPredicted RBP17.48■□□□□ 0.39
LIG1-204ENST00000542460 SP110Q9HB58 689 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 SAE1Q9UBE0 346 aaPredicted RBP17.48■□□□□ 0.39
LIG1-204ENST00000542460 HS3ST2Q9Y278 367 aa17.48■□□□□ 0.39
LIG1-204ENST00000542460 J3KR12 359 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 CES2O00748 559 aa17.47■□□□□ 0.39
LIG1-204ENST00000542460 MAFKO60675 156 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms