RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 ACBD5Q5T8D3 534 aaPredicted RBP8.63□□□□□ -1.03
CHD4-208ENST00000540960 DCAF12L1Q5VU92 463 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 DUPD1Q68J44 220 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 TRIM68Q6AZZ1 485 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 DHRS13Q6UX07 377 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 SPOCD1Q6ZMY3 1216 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 RTL10Q7L3V2 364 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 GSTA5Q7RTV2 222 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 DNAAF5Q86Y56 855 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 ARHGAP18Q8N392 663 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 SNIP1Q8TAD8 396 aaKnown RBP8.63□□□□□ -1.03
CHD4-208ENST00000540960 CEP76Q8TAP6 659 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 UBA3Q8TBC4 463 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 KBTBD7Q8WVZ9 684 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 E2F7Q96AV8 911 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 LIN37Q96GY3 246 aaPredicted RBP8.63□□□□□ -1.03
CHD4-208ENST00000540960 SNF8Q96H20 258 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 BTBD6Q96KE9 485 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 SUSD3Q96L08 255 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 CEP295NLQ96MC4 621 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 SLITRK1Q96PX8 696 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 SYT15Q9BQS2 421 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 FRMD8Q9BZ67 464 aaPredicted RBP8.63□□□□□ -1.03
CHD4-208ENST00000540960 HPS4Q9NQG7 708 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 METTL5Q9NRN9 209 aaKnown RBP8.63□□□□□ -1.03
CHD4-208ENST00000540960 ZNF446Q9NWS9 450 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 DDX43Q9NXZ2 648 aaKnown RBP8.63□□□□□ -1.03
CHD4-208ENST00000540960 DONSONQ9NYP3 566 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.63□□□□□ -1.035e-7■□□□□ 10.5
CHD4-208ENST00000540960 MTRRQ9UBK8 725 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 NFU1Q9UMS0 254 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 PCDHB8Q9UN66 801 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 AK5Q9Y6K8 562 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 ZFHX3Q15911 3703 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 A0A1W2PRU2 124 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 CLEC18AA5D8T8 446 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 CASTOR2A6NHX0 329 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 OR6C75A6NL08 312 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 BHMG1C9JSJ3 638 aaPredicted RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 E5RJQ4 531 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 F8VP50 259 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 H7C4K7 107 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 PRRG1O14668 218 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 MCF2LO15068 1137 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 TTI1O43156 1089 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 LRCH4O75427 683 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 TRUB2O95900 331 aaKnown RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 ITGAVP06756 1048 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 PDGFRBP09619 1106 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 TGM2P21980 687 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 HTR7P34969 479 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 NOS2P35228 1153 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 HSPA9P38646 679 aaKnown RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 ADCY8P40145 1251 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 MATKP42679 507 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 NR2C2P49116 596 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 YWHAZP63104 245 aaKnown RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 KLF1Q13351 362 aaPredicted RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 PTK6Q13882 451 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 BYSLQ13895 437 aaKnown RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 TAZQ16635 292 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 MAP7D1Q3KQU3 841 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 WSCD1Q658N2 575 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 OLFML1Q6UWY5 402 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 CLEC18BQ6UXF7 455 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 FAM183BPQ6ZVS7 135 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 BBS12Q6ZW61 710 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 TRMT10CQ7L0Y3 403 aaKnown RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 HOOK3Q86VS8 718 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 CLEC18CQ8NCF0 446 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 SLC2A14Q8TDB8 520 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 C2orf15Q8WU43 125 aaKnown RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 RXFP2Q8WXD0 754 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 ELMO3Q96BJ8 720 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 NXPE2Q96DL1 559 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 NAF1Q96HR8 494 aaKnown RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 FUBP3Q96I24 572 aaKnown RBP eCLIP8.62□□□□□ -1.03
CHD4-208ENST00000540960 CCDC114Q96M63 670 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 PHF12Q96QT6 1004 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 LPIN3Q9BQK8 851 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 CCDC77Q9BR77 488 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 ZNF670Q9BS34 389 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 FAM117AQ9C073 453 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 DCLK3Q9C098 648 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 PHACTR1Q9C0D0 580 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 CXCL16Q9H2A7 254 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 EBF3Q9H4W6 596 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 PPCSQ9HAB8 311 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 DMAP1Q9NPF5 467 aaPredicted RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 GKN1Q9NS71 199 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 FAM49BQ9NUQ9 324 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 COMMD8Q9NX08 183 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 EHD2Q9NZN4 543 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 HMGXB4Q9UGU5 601 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 ASIC3Q9UHC3 531 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 ZNF148Q9UQR1 794 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 HEMK1Q9Y5R4 338 aaPredicted RBP8.62□□□□□ -1.03
CHD4-208ENST00000540960 RAD54BQ9Y620 910 aa8.62□□□□□ -1.03
CHD4-208ENST00000540960 NF1P21359 2839 aa8.61□□□□□ -1.03
CHD4-208ENST00000540960 hCG_1818297A0A087WSY0 165 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms