RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TKTL1P51854 596 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 GDF10P55107 478 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 NOMO1Q15155 1222 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 CA9Q16790 459 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 SKIDA1Q1XH10 827 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 ANKRD20A8PQ5CZ79 823 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 ERMARDQ5T6L9 678 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 FSTL4Q6MZW2 842 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 NPNTQ6UXI9 565 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 MIB1Q86YT6 1006 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 SIX6OS1Q8N1H7 587 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-208ENST00000537004 P3H4Q92791 437 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 EZH1Q92800 747 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-208ENST00000537004 FAM149B1Q96BN6 582 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 TMEM109Q9BVC6 243 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 LRRC4Q9HBW1 653 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLIP1-208ENST00000537004 NOVA2Q9UNW9 492 aaKnown RBP12.27□□□□□ -0.45
CLIP1-208ENST00000537004 SHROOM3Q8TF72 1996 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 GVINP1Q7Z2Y8 2422 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 NUP205Q92621 2012 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 DAB1O75553 588 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 EGFP01133 1207 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 CYP17A1P05093 508 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 RBP3P10745 1247 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 HOXD11P31277 338 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-208ENST00000537004 ACTN2P35609 894 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 TUBP50607 506 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 ATXN1P54253 815 aaKnown RBP12.26□□□□□ -0.45
CLIP1-208ENST00000537004 MORF4L2Q15014 288 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 KYNUQ16719 465 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 GAB4Q2WGN9 574 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 PPP6R3Q5H9R7 873 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-208ENST00000537004 TMEM196Q5HYL7 178 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 RAB41Q5JT25 222 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 C10orf120Q5SQS8 335 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 RNASEH2BQ5TBB1 312 aaKnown RBP12.26□□□□□ -0.45
CLIP1-208ENST00000537004 LEKR1Q6ZMV7 388 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 CEP128Q6ZU80 1094 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 CROCCP2Q86T23 111 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 SFTPA1Q8IWL2 248 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 BBS7Q8IWZ6 715 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 DEFB106AQ8N104 65 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 CPA6Q8N4T0 437 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 EPS8L3Q8TE67 593 aaKnown RBP12.26□□□□□ -0.45
CLIP1-208ENST00000537004 TLCD1Q96CP7 247 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 PGM2Q96G03 612 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 RBM15Q96T37 977 aaKnown RBP eCLIP12.26□□□□□ -0.45
CLIP1-208ENST00000537004 ZNF670Q9BS34 389 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 ULBP1Q9BZM6 244 aa12.26□□□□□ -0.45
CLIP1-208ENST00000537004 TLDC2A0PJX2 215 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 SMIM23A6NLE4 172 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 NDC80O14777 642 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 GREM1O60565 184 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 ATP5C1P36542 298 aaKnown RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 IRAK1P51617 712 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 MAGOHP61326 146 aaKnown RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 YWHAZP63104 245 aaKnown RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 GNGT1P63211 74 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 SATB1Q01826 763 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 DHCR24Q15392 516 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 DPYSL2Q16555 572 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 SLC25A52Q3SY17 297 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 TTC19Q6DKK2 380 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 C1orf228Q6PIY5 440 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 STRADAQ7RTN6 431 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 BHLHA9Q7RTU4 235 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 ZC3H18Q86VM9 953 aaKnown RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 RELL1Q8IUW5 271 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 UNC45BQ8IWX7 931 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 ARFGAP2Q8N6H7 521 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 PQLC3Q8N755 202 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 PLD5Q8N7P1 536 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 FAM71DQ8N9W8 422 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 PCDH19Q8TAB3 1148 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 MSANTD3Q96H12 275 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 P2RY13Q9BPV8 354 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 KLF16Q9BXK1 252 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 NINJ2Q9NZG7 142 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 AP4E1Q9UPM8 1137 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 SHOC2Q9UQ13 582 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 FAM186AA6NE01 2351 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 MIA3Q5JRA6 1907 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 A6NNZ2 444 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 ZNF487B1APH4 448 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 TRDMT1O14717 391 aaKnown RBP12.25□□□□□ -0.45
CLIP1-208ENST00000537004 APOL1O14791 398 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 RASGRF2O14827 1237 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 NFATC1O95644 943 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 ZBED1O96006 694 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 TGM2P21980 687 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 L1CAMP32004 1257 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 NBL1P41271 181 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 SLC6A11P48066 632 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 SULT1E1P49888 294 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 TUBB8Q3ZCM7 444 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 DCAF6Q58WW2 860 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 LY6G5CQ5SRR4 150 aa12.25□□□□□ -0.45
CLIP1-208ENST00000537004 C6orf118Q5T5N4 469 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms