RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 HPS4Q9NQG7 708 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 AVENQ9NQS1 362 aaPredicted RBP3.8□□□□□ -1.8
MCF2-210ENST00000536274 ZNF277Q9NRM2 450 aaPredicted RBP3.8□□□□□ -1.8
MCF2-210ENST00000536274 RNF186Q9NXI6 227 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 PAQR5Q9NXK6 330 aaPredicted RBP3.8□□□□□ -1.8
MCF2-210ENST00000536274 TMEM216Q9P0N5 145 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 GCNT4Q9P109 453 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 ACTR3BQ9P1U1 418 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 TLK1Q9UKI8 766 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 RAB26Q9ULW5 256 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 PCDHA12Q9UN75 941 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 ANGPTL3Q9Y5C1 460 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 PCDHAC2Q9Y5I4 1007 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 MAU2Q9Y6X3 613 aa3.8□□□□□ -1.8
MCF2-210ENST00000536274 GOLGA8OA6NCC3 632 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 LRRIQ4A6NIV6 560 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TRIM49D1C9J1S8 452 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 GOLGA8NF8WBI6 632 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SCO2O43819 266 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SNX2O60749 519 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 NDUFS6O75380 124 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 KLHL2O95198 593 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 IL18RAPO95256 599 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CELF2O95319 508 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 BCL10O95999 233 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 IFNB1P01574 187 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 KRT7P08729 469 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ARSAP15289 507 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ZNF26P17031 533 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 CFL1P23528 166 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 NR2F2P24468 414 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 EEF1B2P24534 225 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 GTF2E2P29084 291 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 EEF1DP29692 281 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 DPP6P42658 865 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SLC9A3P48764 834 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 GMPSP49915 693 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 B2MP61769 119 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SNRPD2P62316 118 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 FAAP100Q0VG06 881 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 AQP6Q13520 282 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 STAT4Q14765 748 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 EPHA7Q15375 998 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ZBED5Q49AG3 693 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DNAL1Q4LDG9 190 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ATP13A4Q4VNC1 1196 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 RARS2Q5T160 578 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 ZNF697Q5TEC3 545 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 AGAP7PQ5VUJ5 663 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 UNC5AQ6ZN44 842 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 KCTD8Q6ZWB6 473 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ARCQ7LC44 396 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ANKRD13BQ86YJ7 626 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 REXO1Q8N1G1 1221 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 PAF1Q8N7H5 531 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 GLB1L3Q8NCI6 653 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 FAM83FQ8NEG4 500 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 FAM84AQ96KN4 292 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 STRBPQ96SI9 672 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 CDRT15Q96T59 188 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DNAI2Q9GZS0 605 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TRPV6Q9H1D0 765 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 C2orf40Q9H1Z8 148 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TNKS2Q9H2K2 1166 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 NOL11Q9H8H0 719 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 CHST12Q9NRB3 414 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PNPOQ9NVS9 261 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 THG1LQ9NWX6 298 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 TOR4AQ9NXH8 423 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SAE1Q9UBE0 346 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 NXF1Q9UBU9 619 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 DNAJB4Q9UDY4 337 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 KLF15Q9UIH9 416 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DNMT3LQ9UJW3 386 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PSMD13Q9UNM6 376 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CFL2Q9Y281 166 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DAGLAQ9Y4D2 1042 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PPME1Q9Y570 386 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SNX13Q9Y5W8 968 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 NR2E3Q9Y5X4 410 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ZNF236Q9UL36 1845 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CNTNAP2Q9UHC6 1331 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ARPC4-TTLL3A0A0A6YYG9 625 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CCDC194A0A1B0GVG4 234 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 GSG1L2A8MUP6 293 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 E9PMD0 336 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SOCS2O14508 198 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SGTAO43765 313 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TOM1L1O75674 476 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CCNKO75909 580 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TDP2O95551 362 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TMEM191BP0C7N4 346 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TRIM49P0CI25 452 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TRIM49CP0CI26 452 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ENO3P13929 434 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 POLR2CP19387 275 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 TNFAIP3P21580 790 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ATP2B4P23634 1241 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 COPAP53621 1224 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ESRRGP62508 458 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms