RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 C1orf146Q5VVC0 180 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 PPFIBP2Q8ND30 876 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 URGCPQ8TCY9 931 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 ISL2Q96A47 359 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 PAAF1Q9BRP4 392 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 ZNF212Q9UDV6 495 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 WASF2Q9Y6W5 498 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 MAGEB16A2A368 324 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 CCDC78A2IDD5 438 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 ANKRD33BA6NCL7 494 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 ARL5CA6NH57 179 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 HHLA1C9JL84 531 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 GOLGA8TH3BQL2 631 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 JCHAINP01591 159 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 MPOP05164 745 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 CTSHP09668 335 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 NCF2P19878 526 aaPredicted RBP13.42□□□□□ -0.26
LDLR-203ENST00000535915 HARS2P49590 506 aaKnown RBP13.42□□□□□ -0.26
LDLR-203ENST00000535915 CXCR3P49682 368 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 ZRSR2Q15696 482 aaKnown RBP13.42□□□□□ -0.26
LDLR-203ENST00000535915 PDPK2PQ6A1A2 396 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 TAF2Q6P1X5 1199 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 BHLHA9Q7RTU4 235 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 SPDYE1Q8NFV5 336 aaPredicted RBP13.42□□□□□ -0.26
LDLR-203ENST00000535915 VAT1Q99536 393 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 IL22Q9GZX6 179 aa13.42□□□□□ -0.26
LDLR-203ENST00000535915 IARS2Q9NSE4 1012 aaKnown RBP13.42□□□□□ -0.26
LDLR-203ENST00000535915 TIMM44O43615 452 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 HSPA4LO95757 839 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 SRGAP2BP0DMP2 458 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 PCSK1P29120 753 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 CPOXP36551 454 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 SCNN1GP51170 649 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 SLC25A3Q00325 362 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 PRPSAP1Q14558 356 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 PPP2R5DQ14738 602 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 CFAP157Q5JU67 520 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 C2orf69Q8N8R5 385 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 USP33Q8TEY7 942 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 MYLPFQ96A32 169 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 TEKT5Q96M29 485 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 OXCT2Q9BYC2 517 aaPredicted RBP13.41□□□□□ -0.26
LDLR-203ENST00000535915 SNUPNO95149 360 aaKnown RBP13.41□□□□□ -0.26
LDLR-203ENST00000535915 C2P06681 752 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 NMBRP28336 390 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 COPAP53621 1224 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 ACTR3P61158 418 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 FKBP1BP68106 108 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 USP4Q13107 963 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 FRG1Q14331 258 aaKnown RBP13.41□□□□□ -0.26
LDLR-203ENST00000535915 PAN2Q504Q3 1202 aaKnown RBP13.41□□□□□ -0.26
LDLR-203ENST00000535915 RWDD4Q6NW29 188 aaKnown RBP13.41□□□□□ -0.26
LDLR-203ENST00000535915 TAC4Q86UU9 113 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 SREK1Q8WXA9 508 aaKnown RBP13.41□□□□□ -0.26
LDLR-203ENST00000535915 SHCBP1LQ9BZQ2 653 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 ANGPTL2Q9UKU9 493 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 PCDHB12Q9Y5F1 795 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 MYLKQ15746 1914 aa13.41□□□□□ -0.26
LDLR-203ENST00000535915 ZNF195O14628 629 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 MAP3K7O43318 606 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 MYL4P12829 197 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 ALOX15P16050 662 aaPredicted RBP13.4□□□□□ -0.26
LDLR-203ENST00000535915 BDNFP23560 247 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 HOXC8P31273 242 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 ZNF135P52742 658 aaPredicted RBP13.4□□□□□ -0.26
LDLR-203ENST00000535915 CDH17Q12864 832 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 TIGD5Q53EQ6 642 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 NAPEPLDQ6IQ20 393 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 NAPRTQ6XQN6 538 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 RAPH1Q70E73 1250 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 SLC25A41Q8N5S1 370 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 ZNF781Q8N8C0 355 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 VPS39Q96JC1 886 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 SIK2Q9H0K1 926 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 NMRAL1Q9HBL8 299 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 TRPV2Q9Y5S1 764 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 CDY1Q9Y6F8 540 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 G3V2L1 256 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 SKIP12755 728 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 SAT1P21673 171 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 CSE1LP55060 971 aaKnown RBP13.4□□□□□ -0.26
LDLR-203ENST00000535915 AP2B1P63010 937 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 KLC1Q07866 573 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 DCLRE1AQ6PJP8 1040 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 OTOP3Q7RTS5 596 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 ACVR1CQ8NER5 493 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 OR6Y1Q8NGX8 325 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 AGR3Q8TD06 166 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 APBA2Q99767 749 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 YIPF3Q9GZM5 350 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 COG4Q9H9E3 785 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 SLC39A10Q9ULF5 831 aa13.4□□□□□ -0.26
LDLR-203ENST00000535915 CORO1CQ9ULV4 474 aaPredicted RBP13.4□□□□□ -0.26
LDLR-203ENST00000535915 A0A088AWK7 358 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 DFFAO00273 331 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 CELF2O95319 508 aaKnown RBP13.39□□□□□ -0.27
LDLR-203ENST00000535915 ANPEPP15144 967 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 CLEC14AQ86T13 490 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 CSNK1G1Q9HCP0 422 aa13.39□□□□□ -0.27
LDLR-203ENST00000535915 MAN1C1Q9NR34 630 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms