RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 DNAJC1Q96KC8 554 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 MAF1Q9H063 256 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 RNF39Q9H2S5 420 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 CACNG4Q9UBN1 327 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 STK39Q9UEW8 545 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 TMEM233B4DJY2 109 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 HDAC3O15379 428 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 TOMM70O94826 608 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 FBXO21O94952 628 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 JCHAINP01591 159 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 NMBRP28336 390 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 CEACAM7Q14002 265 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 TTLL12Q14166 644 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 SLC5A9Q2M3M2 681 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 SEL1L3Q68CR1 1132 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 UNC93AQ86WB7 457 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 ZSCAN18Q8TBC5 510 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 SREK1Q8WXA9 508 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 EIF2B3Q9NR50 452 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 RUVBL2Q9Y230 463 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 MCM3APO60318 1980 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 MATN2O00339 956 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 DNAJA2O60884 412 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 SLC25A27O95847 323 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 GLUD2P49448 558 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 DYNC1I2Q13409 638 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 ART3Q13508 389 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 CYLC2Q14093 348 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 OTUD1Q5VV17 481 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 BNC2Q6ZN30 1099 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 TMEM135Q86UB9 458 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 IFNLR1Q8IU57 520 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 CELF6Q96J87 481 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 NPAS2Q99743 824 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 GPRC5DQ9NZD1 345 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 SSC5DA1L4H1 1573 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 PTPRFP10586 1907 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 DNAJC25-GNG10A0A024R161 153 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 I6L893 689 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 NRP1O14786 923 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 NFKB1P19838 968 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 KYAT1Q16773 422 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 C6orf52Q5T4I8 152 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 KDELC2Q7Z4H8 507 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 LINC01465Q8N7H1 131 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 BHLHE22Q8NFJ8 381 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 HSFY1Q96LI6 401 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 PRPF18Q99633 342 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 IGSF9Q9P2J2 1179 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 LZTS1Q9Y250 596 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 ANK1P16157 1881 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 AP2A1O95782 977 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 TFAP2AP05549 437 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 ARSAP15289 507 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 ACADSBP45954 432 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 RPL14P50914 215 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 SNAPC2Q13487 334 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 LAMC2Q13753 1193 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 GRIK4Q16099 956 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 METTL21CQ5VZV1 264 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 RBM44Q6ZP01 1051 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 NT5DC4Q86YG4 428 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 LILRA2Q8N149 483 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 CRYBG2Q8N1P7 616 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 NPWQ8N729 165 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 RNF217Q8TC41 542 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 MPP4Q96JB8 637 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 SERPINI1Q99574 410 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 MED10Q9BTT4 135 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 GRIP2Q9C0E4 1043 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 AP4B1Q9Y6B7 739 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 DOCK1Q14185 1865 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 NUP205Q92621 2012 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 ANKRD33BA6NCL7 494 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 GRID2O43424 1007 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 CLPTM1O96005 669 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 ADRA1BP35368 520 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 DPP6P42658 865 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 MAP3K7CLP57077 242 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 CTBP1Q13363 440 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 LSAMPQ13449 338 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 NAB1Q13506 487 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 ZBTB6Q15916 424 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 OGFRL1Q5TC84 451 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 POTEAQ6S8J7 498 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 OSTM1Q86WC4 334 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 PCDH20Q8N6Y1 951 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 PNPLA1Q8N8W4 532 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 SNX31Q8N9S9 440 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 APPL2Q8NEU8 664 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 HIC2Q96JB3 615 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 SNX27Q96L92 541 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 PKP2Q99959 881 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 MLPHQ9BV36 600 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 DDX18Q9NVP1 670 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 OXSMQ9NWU1 459 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 ADA2Q9NZK5 511 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 CRTAMO95727 393 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 SRGAP2BP0DMP2 458 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms