RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 MMRN1Q13201 1228 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 ENPP2Q13822 863 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 PTPRNQ16849 979 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 CCDC50Q8IVM0 306 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 PCDH19Q8TAB3 1148 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 RNF157Q96PX1 679 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 ACOX2Q99424 681 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 PRRX2Q99811 253 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 GABRG3Q99928 467 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 POLMQ9NP87 494 aaPredicted RBP17.5■□□□□ 0.39
HDAC6-235ENST00000495515 VPS51Q9UID3 782 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 HCN2Q9UL51 889 aa17.5■□□□□ 0.39
HDAC6-235ENST00000495515 ZDBF2Q9HCK1 2354 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 SGK1O00141 431 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 KDELR3O43731 214 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 PAPSS2O95340 614 aaPredicted RBP17.49■□□□□ 0.39
HDAC6-235ENST00000495515 CHRM1P11229 460 aaPredicted RBP17.49■□□□□ 0.39
HDAC6-235ENST00000495515 ACVRL1P37023 503 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 IL12RB1P42701 662 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 WASP42768 502 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 CTSOP43234 321 aaPredicted RBP17.49■□□□□ 0.39
HDAC6-235ENST00000495515 CLCN6P51797 869 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 COPS2P61201 443 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 TFDP2Q14188 446 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 CRY1Q16526 586 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 PKN3Q6P5Z2 889 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 METTL3Q86U44 580 aaKnown RBP17.49■□□□□ 0.39
HDAC6-235ENST00000495515 LRRC49Q8IUZ0 686 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 KRT35Q92764 455 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 HMCESQ96FZ2 354 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 CELF6Q96J87 481 aaKnown RBP17.49■□□□□ 0.39
HDAC6-235ENST00000495515 PSMB7Q99436 277 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 NOL6Q9H6R4 1146 aaKnown RBP17.49■□□□□ 0.39
HDAC6-235ENST00000495515 LRRC19Q9H756 370 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 ZDHHC4Q9NPG8 344 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 HS3ST2Q9Y278 367 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 KMT2EQ8IZD2 1858 aa17.49■□□□□ 0.39
HDAC6-235ENST00000495515 ANTXRLA6NF34 631 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 C3orf70A6NLC5 250 aaPredicted RBP17.48■□□□□ 0.39
HDAC6-235ENST00000495515 DFFAO00273 331 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 APOL1O14791 398 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 SNAP91O60641 907 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 ADAM23O75077 832 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 ALDH1A2O94788 518 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 EPHX1P07099 455 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 MARCKSL1P49006 195 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 SERINC3Q13530 473 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 PAFAH1B3Q15102 231 aaKnown RBP17.48■□□□□ 0.39
HDAC6-235ENST00000495515 TFDP3Q5H9I0 405 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 AFMIDQ63HM1 303 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 MFSD7Q6UXD7 560 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 SPOCD1Q6ZMY3 1216 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 RFX6Q8HWS3 928 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 CAMKK1Q8N5S9 505 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 ATP11CQ8NB49 1132 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 TSTD1Q8NFU3 115 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 CASKIN2Q8WXE0 1202 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 RPL10LQ96L21 214 aaKnown RBP17.48■□□□□ 0.39
HDAC6-235ENST00000495515 MRGPRX3Q96LB0 322 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 SLC39A8Q9C0K1 460 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 KLC2Q9H0B6 622 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 TMEM245Q9H330 911 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 TRMT1Q9NXH9 659 aaKnown RBP17.48■□□□□ 0.39
HDAC6-235ENST00000495515 FBXO4Q9UKT5 387 aa17.48■□□□□ 0.39
HDAC6-235ENST00000495515 MIA3Q5JRA6 1907 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 EDDM13A0A1B0GTR0 161 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 WASH3PC4AMC7 463 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 GALR2O43603 387 aaPredicted RBP17.47■□□□□ 0.39
HDAC6-235ENST00000495515 KIF5CO60282 957 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 ZMPSTE24O75844 475 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 MX2P20592 715 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 CDKN2BP42772 138 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 NUMBP49757 651 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 STK19P49842 368 aaPredicted RBP17.47■□□□□ 0.39
HDAC6-235ENST00000495515 PEX5P50542 639 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 PAPOLAP51003 745 aaKnown RBP17.47■□□□□ 0.39
HDAC6-235ENST00000495515 SATB1Q01826 763 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 RPS6KA1Q15418 735 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 PPP2R5EQ16537 467 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 HNRNPA1L2Q32P51 320 aaKnown RBP17.47■□□□□ 0.39
HDAC6-235ENST00000495515 ACCSLQ4AC99 568 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 NCBP2-AS2Q69YL0 99 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 BZW1Q7L1Q6 419 aaKnown RBP17.47■□□□□ 0.39
HDAC6-235ENST00000495515 ARHGAP12Q8IWW6 846 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 REXO1L1PQ8IX06 675 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 SH2D3CQ8N5H7 860 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 NPWQ8N729 165 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 PQLC3Q8N755 202 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 HES6Q96HZ4 224 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 CCDC114Q96M63 670 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 FBRSQ9HAH7 460 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 SP110Q9HB58 689 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 PRMT8Q9NR22 394 aaPredicted RBP17.47■□□□□ 0.39
HDAC6-235ENST00000495515 ETNK2Q9NVF9 386 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 SLCO3A1Q9UIG8 710 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 RAD54BQ9Y620 910 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.47■□□□□ 0.39
HDAC6-235ENST00000495515 MUC6Q6W4X9 2439 aa17.47■□□□□ 0.39
HDAC6-235ENST00000495515 TRIOO75962 3097 aa17.46■□□□□ 0.39
HDAC6-235ENST00000495515 TARSL2A2RTX5 802 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms