RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	SRC	P12931	536 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	GOT1	P17174	413 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	CHRNB2	P17787	502 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	C5AR1	P21730	350 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	RACK1	P63244	317 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	CNTN1	Q12860	1018 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLC12A1	Q13621	1099 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	HNRNPD	Q14103	355 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	KRT31	Q15323	416 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	DLG2	Q15700	870 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	NAA35	Q5VZE5	725 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	TFAP2D	Q7Z6R9	452 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	GATAD2A	Q86YP4	633 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	SH2D3C	Q8N5H7	860 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	EMC1	Q8N766	993 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	TMEM35B	Q8NCS4	154 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	OR14C36	Q8NHC7	312 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	CPA5	Q8WXQ8	436 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	PGAP3	Q96FM1	320 aa	Predicted RBP	11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	CFAP57	Q96MR6	1250 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	SPAG5	Q96R06	1193 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	METTL5	Q9NRN9	209 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	ARHGAP20	Q9P2F6	1191 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLC12A6	Q9UHW9	1150 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	VPS51	Q9UID3	782 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	TMEM59L	Q9UK28	342 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	PCDHB9	Q9Y5E1	797 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	PCDHGB2	Q9Y5G2	931 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	ANKRD36	A6QL64	1941 aa		11.96	□□□□□ -0.5
VTI1A-208	ENST00000494728	IGLV3-10	A0A075B6K4	115 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	LRRC72	A6NJI9	287 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	SRRM3	A6NNA2	597 aa	Predicted RBP	11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	VILL	O15195	856 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	LAT	O43561	262 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	CLDN11	O75508	207 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	GFPT2	O94808	682 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	TRIM16	O95361	564 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	RRM1	P23921	792 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	EEF1G	P26641	437 aa	Known RBP	11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	MAT2A	P31153	395 aa	Known RBP	11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	CCT8	P50990	548 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	CCR5	P51681	352 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	CDH4	P55283	916 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	JAM2	P57087	298 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	TAS2R38	P59533	333 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	FMO1	Q01740	532 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	DEUP1	Q05D60	604 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	SULT2A1	Q06520	285 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	ZNF177	Q13360	481 aa	Predicted RBP	11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	TEAD4	Q15561	434 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	SLC25A52	Q3SY17	297 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	BRMS1L	Q5PSV4	323 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	LINGO4	Q6UY18	593 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	CLEC17A	Q6ZS10	378 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	RBM43	Q6ZSC3	357 aa	Known RBP	11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	ADAT2	Q7Z6V5	191 aa	Known RBP	11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	PHLDB2	Q86SQ0	1253 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	ERICH1	Q86X53	443 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	FAM131B	Q86XD5	332 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	ZDHHC17	Q8IUH5	632 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	OR7D4	Q8NG98	312 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	RHBDD1	Q8TEB9	315 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	C18orf8	Q96DM3	657 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	MAGEB5	Q9BZ81	275 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	VPS16	Q9H269	839 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	WDCP	Q9H6R7	721 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	DACH1	Q9UI36	760 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	SLC25A13	Q9UJS0	675 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	PPM1H	Q9ULR3	514 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	STAP1	Q9ULZ2	295 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	NEU3	Q9UQ49	428 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	HS3ST2	Q9Y278	367 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	CA5B	Q9Y2D0	317 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	GCN1	Q92616	2671 aa	Known RBP	11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	MGA	Q8IWI9	3026 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	CFAP46	Q8IYW2	2715 aa		11.95	□□□□□ -0.5
VTI1A-208	ENST00000494728	ATM	Q13315	3056 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	COL27A1	Q8IZC6	1860 aa	Predicted RBP	11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728		A0A1B0GTQ1	180 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	GOLGA8CP	A6NN73	597 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	DRGX	A6NNA5	263 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728		E9PAM4	449 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	PLRG1	O43660	514 aa	Known RBP	11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	BNIP3L	O60238	219 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	PCDHGA12	O60330	932 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	ZNF821	O75541	412 aa	Predicted RBP	11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	LSM8	O95777	96 aa	Known RBP	11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	RHOC	P08134	193 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	SCNN1A	P37088	669 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	VASP	P50552	380 aa	Predicted RBP	11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	CLDN6	P56747	220 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	BPIFB4	P59827	614 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	ACCSL	Q4AC99	568 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	PIP5KL1	Q5T9C9	394 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	SMYD5	Q6GMV2	418 aa		11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	SPATS2	Q86XZ4	545 aa	Known RBP	11.94	□□□□□ -0.5
VTI1A-208	ENST00000494728	CHST14	Q8NCH0	376 aa		11.94	□□□□□ -0.5

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