RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 BHMG1C9JSJ3 638 aaPredicted RBP11.65□□□□□ -0.54
MCF2L-231ENST00000494043 J3KR12 359 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 KCNK1O00180 336 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 MATN3O15232 486 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 CHADO15335 359 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 KDELR3O43731 214 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 CACNG3O60359 315 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 PRAMEF11O60813 436 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 PEX11BO96011 259 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 ZSCAN5DPP0CG00 497 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 ETS1P14921 441 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 PTPN3P26045 913 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 MZF1P28698 734 aaPredicted RBP11.65□□□□□ -0.54
MCF2L-231ENST00000494043 GDI1P31150 447 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 CD70P32970 193 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 CSKP41240 450 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 NRLP54845 237 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 IFI35P80217 286 aaPredicted RBP11.65□□□□□ -0.54
MCF2L-231ENST00000494043 GUCY2DQ02846 1103 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 TNK2Q07912 1038 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 IL10RBQ08334 325 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 WASHC5Q12768 1159 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 NAA30Q147X3 362 aaPredicted RBP11.65□□□□□ -0.54
MCF2L-231ENST00000494043 TRIP13Q15645 432 aaPredicted RBP11.65□□□□□ -0.54
MCF2L-231ENST00000494043 SMAD2Q15796 467 aaKnown RBP11.65□□□□□ -0.54
MCF2L-231ENST00000494043 P3H1Q32P28 736 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 DUPD1Q68J44 220 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 IL31Q6EBC2 164 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 PRUNE1Q86TP1 453 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 CPA6Q8N4T0 437 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 MAML1Q92585 1016 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 RUBCNQ92622 972 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 ALG14Q96F25 216 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 SPATA13Q96N96 652 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 FEM1AQ9BSK4 669 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 SPON2Q9BUD6 331 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 RPP25Q9BUL9 199 aaKnown RBP11.65□□□□□ -0.54
MCF2L-231ENST00000494043 TRMT61BQ9BVS5 477 aaKnown RBP11.65□□□□□ -0.54
MCF2L-231ENST00000494043 SLC2A11Q9BYW1 496 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 ECT2Q9H8V3 914 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 SP110Q9HB58 689 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 PDFQ9HBH1 243 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 ATP13A1Q9HD20 1204 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 ASIC3Q9UHC3 531 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 VPS28Q9UK41 221 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 UTP11Q9Y3A2 253 aaKnown RBP11.65□□□□□ -0.54
MCF2L-231ENST00000494043 OR51B4Q9Y5P0 310 aa11.65□□□□□ -0.54
MCF2L-231ENST00000494043 COL4A3Q01955 1670 aa11.65□□□□□ -0.55
MCF2L-231ENST00000494043 ARNTLO00327 626 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 OPHN1O60890 802 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 GCATO75600 419 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 HLA-FP30511 346 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 RPL22P35268 128 aaKnown RBP11.64□□□□□ -0.55
MCF2L-231ENST00000494043 ACTN2P35609 894 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 VPS41P49754 854 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 PLK1P53350 603 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 ZBTB17Q13105 803 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 SLC12A1Q13621 1099 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 RUNX3Q13761 415 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 ELF2Q15723 593 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 GAB4Q2WGN9 574 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 PLEKHG6Q3KR16 790 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 PUS10Q3MIT2 529 aaKnown RBP11.64□□□□□ -0.55
MCF2L-231ENST00000494043 TMCO4Q5TGY1 634 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 ASTLQ6HA08 431 aaPredicted RBP11.64□□□□□ -0.55
MCF2L-231ENST00000494043 PTCRAQ6ISU1 281 aaPredicted RBP11.64□□□□□ -0.55
MCF2L-231ENST00000494043 C4orf22Q6V702 233 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 ETFBKMTQ8IXQ9 262 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 PLCD3Q8N3E9 789 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 GPR161Q8N6U8 529 aaKnown RBP11.64□□□□□ -0.55
MCF2L-231ENST00000494043 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.64□□□□□ -0.55
MCF2L-231ENST00000494043 DCAF4L2Q8NA75 395 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 MAFAQ8NHW3 353 aaPredicted RBP11.64□□□□□ -0.55
MCF2L-231ENST00000494043 CCDC110Q8TBZ0 833 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 SEC14L1Q92503 715 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 ZNF599Q96NL3 588 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 XPO6Q96QU8 1125 aaKnown RBP11.64□□□□□ -0.55
MCF2L-231ENST00000494043 VAT1Q99536 393 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 IL12RB2Q99665 862 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 CEP41Q9BYV8 373 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 TRIM31Q9BZY9 425 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 EPC1Q9H2F5 836 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 ABCB8Q9NUT2 735 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 DNAJC17Q9NVM6 304 aaKnown RBP11.64□□□□□ -0.55
MCF2L-231ENST00000494043 PAK5Q9P286 719 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 GGA2Q9UJY4 613 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 FBXO10Q9UK96 956 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 TRHDEQ9UKU6 1024 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 HPCAL4Q9UM19 191 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 FAM50BQ9Y247 325 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 CHD5Q8TDI0 1954 aa11.64□□□□□ -0.55
MCF2L-231ENST00000494043 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.63□□□□□ -0.55
MCF2L-231ENST00000494043 ESYT3A0FGR9 886 aa11.63□□□□□ -0.55
MCF2L-231ENST00000494043 OTOL1A6NHN0 477 aaPredicted RBP11.63□□□□□ -0.55
MCF2L-231ENST00000494043 CBX4O00257 560 aa11.63□□□□□ -0.55
MCF2L-231ENST00000494043 SNAP91O60641 907 aa11.63□□□□□ -0.55
MCF2L-231ENST00000494043 ZMPSTE24O75844 475 aa11.63□□□□□ -0.55
MCF2L-231ENST00000494043 JCHAINP01591 159 aa11.63□□□□□ -0.55
MCF2L-231ENST00000494043 PABPC1P11940 636 aaKnown RBP11.63□□□□□ -0.55
MCF2L-231ENST00000494043 CCNB1P14635 433 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms