RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 C14orf80Q86SX3 495 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 ZNF280BQ86YH2 543 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.69□□□□□ -0.38
HMGN1-220ENST00000492280 PIWIL2Q8TC59 973 aaKnown RBP12.69□□□□□ -0.38
HMGN1-220ENST00000492280 MAPK15Q8TD08 544 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 NTAN1Q96AB6 310 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 SGF29Q96ES7 293 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 RSRC1Q96IZ7 334 aaKnown RBP12.69□□□□□ -0.38
HMGN1-220ENST00000492280 OSBPL1AQ9BXW6 950 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 CXorf56Q9H5V9 222 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 TLE6Q9H808 572 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 OSER1Q9NX31 292 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 HCSTQ9UBK5 93 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 NEU3Q9UQ49 428 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 TBX10O75333 385 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 PAGE1O75459 146 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 PDE5AO76074 875 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 FBXO21O94952 628 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 ODC1P11926 461 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 GRK4P32298 578 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 ABL2P42684 1182 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 CXCR3P49682 368 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 FLT3LGP49771 235 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 GALNT2Q10471 571 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 MPP3Q13368 585 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 TUBB3Q13509 450 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 SEPT6Q14141 434 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 CCDC6Q16204 474 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 DDR2Q16832 855 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 KCTD11Q693B1 232 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 OVOS1Q6IE37 1185 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 TIFABQ6ZNK6 161 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 SERINC5Q86VE9 423 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 IFNL1Q8IU54 200 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 PHTF2Q8N3S3 785 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 HIPK4Q8NE63 616 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 ZSCAN18Q8TBC5 510 aaPredicted RBP12.69□□□□□ -0.38
HMGN1-220ENST00000492280 VPS39Q96JC1 886 aa12.69□□□□□ -0.38
HMGN1-220ENST00000492280 DUSP11O75319 330 aaKnown RBP12.68□□□□□ -0.38
HMGN1-220ENST00000492280 GJB3O75712 270 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 C2P06681 752 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 PCSK1P29120 753 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 EPHB1P54762 984 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 SCAPQ12770 1279 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 SLC39A12Q504Y0 691 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 IL31Q6EBC2 164 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 KYAT3Q6YP21 454 aaKnown RBP12.68□□□□□ -0.38
HMGN1-220ENST00000492280 HDAC11Q96DB2 347 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 MARK4Q96L34 752 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 FICDQ9BVA6 458 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 CCDC106Q9BWC9 280 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 DNAI2Q9GZS0 605 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 DMAP1Q9NPF5 467 aaPredicted RBP12.68□□□□□ -0.38
HMGN1-220ENST00000492280 CASS4Q9NQ75 786 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 PTPRDP23468 1912 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 TBX18O95935 607 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 CYBAP13498 195 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 GABRB3P28472 473 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 LIMK2P53671 638 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 LPIN1Q14693 890 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 KCNA10Q16322 511 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 SPANXN3Q5MJ09 141 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 SMYD5Q6GMV2 418 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 ESRP1Q6NXG1 681 aaKnown RBP12.68□□□□□ -0.38
HMGN1-220ENST00000492280 PAXIP1Q6ZW49 1069 aaPredicted RBP12.68□□□□□ -0.38
HMGN1-220ENST00000492280 RPS27LQ71UM5 84 aaKnown RBP12.68□□□□□ -0.38
HMGN1-220ENST00000492280 TMEM135Q86UB9 458 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 CIR1Q86X95 450 aaPredicted RBP12.68□□□□□ -0.38
HMGN1-220ENST00000492280 SLC41A1Q8IVJ1 513 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 ARHGAP12Q8IWW6 846 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 TRIM42Q8IWZ5 723 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 TMEM86AQ8N2M4 240 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 ATPAF2Q8N5M1 289 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 KCTD4Q8WVF5 259 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 TEKT5Q96M29 485 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 CPNE1Q99829 537 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 OMDQ99983 421 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 SLC39A8Q9C0K1 460 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 NLRC5Q86WI3 1866 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 A0A1W2PQH9 124 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 WFS1O76024 890 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 VAPBO95292 243 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 CPA3P15088 417 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 MPSTP25325 297 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 ARPP19P56211 112 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 PRKCZQ05513 592 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 SLC9B1Q4ZJI4 515 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 URGCPQ8TCY9 931 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 FCRL2Q96LA5 508 aaPredicted RBP12.68□□□□□ -0.38
HMGN1-220ENST00000492280 KLHL5Q96PQ7 755 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 TASP1Q9H6P5 420 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 WDR55Q9H6Y2 383 aaPredicted RBP12.68□□□□□ -0.38
HMGN1-220ENST00000492280 NOD1Q9Y239 953 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 PTCH2Q9Y6C5 1203 aa12.68□□□□□ -0.38
HMGN1-220ENST00000492280 SF3B1O75533 1304 aaKnown RBP eCLIP12.67□□□□□ -0.384e-6■□□□□ 8.6
HMGN1-220ENST00000492280 BIRC5O15392 142 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 DCXO43602 365 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 SIN3BO75182 1162 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 SERPINE1P05121 402 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 HLA-DQB2P05538 268 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms