RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 ELF4Q99607 663 aaPredicted RBP16.14■□□□□ 0.17
SMPD4-220ENST00000491319 MUC3BQ9H195 1237 aa16.14■□□□□ 0.17
SMPD4-220ENST00000491319 PDCL3Q9H2J4 239 aa16.14■□□□□ 0.17
SMPD4-220ENST00000491319 TMPRSS4Q9NRS4 437 aa16.14■□□□□ 0.17
SMPD4-220ENST00000491319 ARHGEF38Q9NXL2 777 aa16.14■□□□□ 0.17
SMPD4-220ENST00000491319 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.14■□□□□ 0.17
SMPD4-220ENST00000491319 CHMP5Q9NZZ3 219 aa16.14■□□□□ 0.17
SMPD4-220ENST00000491319 FTSJ1Q9UET6 329 aa16.14■□□□□ 0.17
SMPD4-220ENST00000491319 STAP1Q9ULZ2 295 aa16.14■□□□□ 0.17
SMPD4-220ENST00000491319 TBC1D30Q9Y2I9 924 aa16.14■□□□□ 0.17
SMPD4-220ENST00000491319 PLRG1O43660 514 aaKnown RBP16.13■□□□□ 0.17
SMPD4-220ENST00000491319 BNIP3LO60238 219 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 DFNA5O60443 496 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 SNAP91O60641 907 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 MAT2AP31153 395 aaKnown RBP16.13■□□□□ 0.17
SMPD4-220ENST00000491319 CXCR3P49682 368 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 BPIFB4P59827 614 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 CNTN1Q12860 1018 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 INAVAQ3KP66 663 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 C2CD6Q53TS8 623 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 BRMS1LQ5PSV4 323 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 FAM102AQ5T9C2 384 aaPredicted RBP16.13■□□□□ 0.17
SMPD4-220ENST00000491319 KLHDC7AQ5VTJ3 777 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 AGBL4Q5VU57 503 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 XYLT1Q86Y38 959 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 ZNF683Q8IZ20 524 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 PIP4K2CQ8TBX8 421 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 NT5C3BQ969T7 300 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 SKA1Q96BD8 255 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 PPP1R9BQ96SB3 815 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 PSMB7Q99436 277 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 WDCPQ9H6R7 721 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 RRN3Q9NYV6 651 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 DSPP15924 2871 aaKnown RBP16.13■□□□□ 0.17
SMPD4-220ENST00000491319 CELSR3Q9NYQ7 3312 aa16.13■□□□□ 0.17
SMPD4-220ENST00000491319 C1QTNF3-AMACRE9PGA6 284 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 CBX4O00257 560 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 MCF2LO15068 1137 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 ALOX15BO15296 676 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 SLC7A4O43246 635 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 MT-CO1P00395 513 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 RHOCP08134 193 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 SRCP12931 536 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 ERCC5P28715 1186 aaPredicted RBP16.12■□□□□ 0.17
SMPD4-220ENST00000491319 FLT3P36888 993 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 GABRB2P47870 512 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 DEUP1Q05D60 604 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 FAM46CQ5VWP2 391 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 NAPEPLDQ6IQ20 393 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 TRNP1Q6NT89 227 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 TFAP2DQ7Z6R9 452 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 NOP9Q86U38 636 aaKnown RBP16.12■□□□□ 0.17
SMPD4-220ENST00000491319 C18orf8Q96DM3 657 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 PGAP3Q96FM1 320 aaPredicted RBP16.12■□□□□ 0.17
SMPD4-220ENST00000491319 NAA15Q9BXJ9 866 aaKnown RBP16.12■□□□□ 0.17
SMPD4-220ENST00000491319 NUP62CLQ9H1M0 184 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 CCDC86Q9H6F5 360 aaKnown RBP16.12■□□□□ 0.17
SMPD4-220ENST00000491319 GDF3Q9NR23 364 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 SAMSN1Q9NSI8 373 aaKnown RBP16.12■□□□□ 0.17
SMPD4-220ENST00000491319 MPP6Q9NZW5 540 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 ARHGAP20Q9P2F6 1191 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 DACH1Q9UI36 760 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 VPS51Q9UID3 782 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 PPM1HQ9ULR3 514 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 TPX2Q9ULW0 747 aaKnown RBP16.12■□□□□ 0.17
SMPD4-220ENST00000491319 HS3ST2Q9Y278 367 aa16.12■□□□□ 0.17
SMPD4-220ENST00000491319 FAM149AA5PLN7 773 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 F8VZ95 297 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 GOLGA8SH3BPF8 625 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 K7ERQ8 282 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 CTSLP07711 333 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 UCHL3P15374 230 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 ZNF18P17022 549 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 RRM1P23921 792 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 EPHA8P29322 1005 aaPredicted RBP16.11■□□□□ 0.17
SMPD4-220ENST00000491319 SCNN1AP37088 669 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 NXPH1P58417 271 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 SLC25A52Q3SY17 297 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 DHRS13Q6UX07 377 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 PRPF39Q86UA1 669 aaKnown RBP16.11■□□□□ 0.17
SMPD4-220ENST00000491319 ERICH1Q86X53 443 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 SAP25Q8TEE9 199 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 KDM4CQ9H3R0 1056 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 LHX6Q9UPM6 363 aa16.11■□□□□ 0.17
SMPD4-220ENST00000491319 URB1O60287 2271 aaKnown RBP16.11■□□□□ 0.17
SMPD4-220ENST00000491319 A0A0D9SEW6 157 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 TLR4O00206 839 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 SMAD6O43541 496 aaKnown RBP16.1■□□□□ 0.17
SMPD4-220ENST00000491319 ITGAVP06756 1048 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 MMEP08473 750 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 GLDCP23378 1020 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 TAS2R38P59533 333 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 NOMO3P69849 1222 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 KRT83P78385 493 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 DNAJC3Q13217 504 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 SLC45A4Q5BKX6 768 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 TCP11X2Q5H9J9 407 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 ARTNQ5T4W7 220 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 PIP5KL1Q5T9C9 394 aa16.1■□□□□ 0.17
SMPD4-220ENST00000491319 LINGO4Q6UY18 593 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms