RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 RAMP2O60895 175 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 ELAVL3Q14576 367 aaKnown RBP17.76■□□□□ 0.43
MDC1-206ENST00000489540 IL31Q6EBC2 164 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 TMEFF1Q8IYR6 380 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 TC2NQ8N9U0 490 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 ATP11CQ8NB49 1132 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 FAM129BQ96TA1 746 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 SNRNP25Q9BV90 132 aaKnown RBP17.76■□□□□ 0.43
MDC1-206ENST00000489540 ACE2Q9BYF1 805 aaPredicted RBP17.76■□□□□ 0.43
MDC1-206ENST00000489540 ATP13A1Q9HD20 1204 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 NDFIP2Q9NV92 336 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 CTTNBP2NLQ9P2B4 639 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 HPCAL4Q9UM19 191 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 FAM186AA6NE01 2351 aa17.76■□□□□ 0.43
MDC1-206ENST00000489540 BCLAF3A2AJT9 711 aaKnown RBP17.75■□□□□ 0.43
MDC1-206ENST00000489540 CBX4O00257 560 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 MT-CO1P00395 513 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 TMEM253P0C7T8 217 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 TGM1P22735 817 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 DPP6P42658 865 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 DHPSP49366 369 aaPredicted RBP17.75■□□□□ 0.43
MDC1-206ENST00000489540 TPI1P60174 286 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 CREB5Q02930 508 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 SPEM2Q0P670 501 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 POLD3Q15054 466 aaPredicted RBP17.75■□□□□ 0.43
MDC1-206ENST00000489540 CSRP2Q16527 193 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 TTC31Q49AM3 519 aaPredicted RBP17.75■□□□□ 0.43
MDC1-206ENST00000489540 ZNF564Q8TBZ8 553 aaPredicted RBP17.75■□□□□ 0.43
MDC1-206ENST00000489540 FOXJ1Q92949 421 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 ARHGEF2Q92974 986 aaKnown RBP17.75■□□□□ 0.43
MDC1-206ENST00000489540 TOE1Q96GM8 510 aaKnown RBP17.75■□□□□ 0.43
MDC1-206ENST00000489540 PEBP4Q96S96 227 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 GPATCH2LQ9NWQ4 482 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 WSB2Q9NYS7 404 aaPredicted RBP17.75■□□□□ 0.43
MDC1-206ENST00000489540 NCKAP1Q9Y2A7 1128 aa17.75■□□□□ 0.43
MDC1-206ENST00000489540 FARP1Q9Y4F1 1045 aaPredicted RBP17.75■□□□□ 0.43
MDC1-206ENST00000489540 EEF2KO00418 725 aaKnown RBP17.74■□□□□ 0.43
MDC1-206ENST00000489540 DAPK3O43293 454 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 ZMPSTE24O75844 475 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 SRCP12931 536 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 HCAR3P49019 387 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 YBEYP58557 167 aaPredicted RBP17.74■□□□□ 0.43
MDC1-206ENST00000489540 CYP4V2Q6ZWL3 525 aaPredicted RBP17.74■□□□□ 0.43
MDC1-206ENST00000489540 DSG4Q86SJ6 1040 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 STK40Q8N2I9 435 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 CADM4Q8NFZ8 388 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 ZNF419Q96HQ0 510 aaPredicted RBP17.74■□□□□ 0.43
MDC1-206ENST00000489540 BTBD6Q96KE9 485 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 PACSIN1Q9BY11 444 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 PABPC3Q9H361 631 aaKnown RBP17.74■□□□□ 0.43
MDC1-206ENST00000489540 CD93Q9NPY3 652 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 VPS45Q9NRW7 570 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 SEMA4GQ9NTN9 838 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 SPTLC3Q9NUV7 552 aa17.74■□□□□ 0.43
MDC1-206ENST00000489540 ALOX15BO15296 676 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 ZNF806P0C7X5 589 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 ACVRL1P37023 503 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 MPLP40238 635 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 PTGER3P43115 390 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 GEMIN4P57678 1058 aaKnown RBP17.73■□□□□ 0.43
MDC1-206ENST00000489540 ZNF33AQ06730 810 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 CST6Q15828 149 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 CA9Q16790 459 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 HADHQ16836 314 aaKnown RBP17.73■□□□□ 0.43
MDC1-206ENST00000489540 PLA2G2CQ5R387 149 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 LYSMD4Q5XG99 296 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 USP30Q70CQ3 517 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 CYP2U1Q7Z449 544 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 CACUL1Q86Y37 369 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 MMAAQ8IVH4 418 aaKnown RBP17.73■□□□□ 0.43
MDC1-206ENST00000489540 KIAA2013Q8IYS2 634 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 CCDC170Q8IYT3 715 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 UMODL1-AS1Q8N2C9 162 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 TEKT4Q8WW24 435 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 OR8D1Q8WZ84 308 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 CCDC114Q96M63 670 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 PANX2Q96RD6 677 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 KCTD15Q96SI1 283 aaPredicted RBP17.73■□□□□ 0.43
MDC1-206ENST00000489540 CEP44Q9C0F1 390 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 PARD6AQ9NPB6 346 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 INTUQ9ULD6 942 aa17.73■□□□□ 0.43
MDC1-206ENST00000489540 K7ERQ8 282 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 MCF2LO15068 1137 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 KDELR3O43731 214 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 ADH1BP00325 375 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 VAV1P15498 845 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 C5AR1P21730 350 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 GLDCP23378 1020 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 IL1R2P27930 398 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 SLC8A1P32418 973 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 SERPINH1P50454 418 aaKnown RBP17.72■□□□□ 0.43
MDC1-206ENST00000489540 PARP15Q460N3 678 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 PPP6R3Q5H9R7 873 aaPredicted RBP17.72■□□□□ 0.43
MDC1-206ENST00000489540 SYCP2LQ5T4T6 812 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 FAM46CQ5VWP2 391 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 LINGO4Q6UY18 593 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 RFX8Q6ZV50 586 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 GANCQ8TET4 914 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 BTBD1Q9H0C5 482 aa17.72■□□□□ 0.43
MDC1-206ENST00000489540 PCED1AQ9H1Q7 454 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms