RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SETD3Q86TU7 594 aaPredicted RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 RHOT2Q8IXI1 618 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 FAM217AQ8IXS0 508 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 BBS5Q8N3I7 341 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 KCTD6Q8NC69 237 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 C1orf216Q8TAB5 229 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 SORCS1Q8WY21 1168 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 RPL10LQ96L21 214 aaKnown RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 C1orf74Q96LT6 269 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 PRICKLE1Q96MT3 831 aaPredicted RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 ZNF830Q96NB3 372 aaPredicted RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 EIF3CQ99613 913 aaKnown RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 OMDQ99983 421 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 THAP2Q9H0W7 228 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 ZNF358Q9NW07 568 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 MPP6Q9NZW5 540 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 DLGAP2Q9P1A6 1054 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 THAP10Q9P2Z0 257 aaPredicted RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 DNAI1Q9UI46 699 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 AP4E1Q9UPM8 1137 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 SMG5Q9UPR3 1016 aaKnown RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 ERVW-1Q9UQF0 538 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 INVSQ9Y283 1065 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 STARD13Q9Y3M8 1113 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 RALGAPA1Q6GYQ0 2036 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 ZNF318Q5VUA4 2279 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 A0A087X0T9 212 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 CCDC163A0A0D9SF12 145 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 EDDM13A0A1B0GTR0 161 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 FAM47DPA6NHR8 397 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 ARHGAP42A6NI28 874 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 GREM1O60565 184 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 PRMT3O60678 531 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 IL1BP01584 269 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 FAM228BP0C875 321 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 HLA-EP13747 358 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 HNRNPLP14866 589 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP40-216ENST00000485943 GNSP15586 552 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 TFE3P19532 575 aaPredicted RBP8.24□□□□□ -1.09
USP40-216ENST00000485943 OXTRP30559 389 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 HTR7P34969 479 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 SERPINB6P35237 376 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 DPP6P42658 865 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 IL12RB1P42701 662 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 MAGEA1P43355 309 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 KIR2DL1P43626 348 aaPredicted RBP8.24□□□□□ -1.09
USP40-216ENST00000485943 SGSHP51688 502 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 ZNF135P52742 658 aaPredicted RBP8.24□□□□□ -1.09
USP40-216ENST00000485943 GALCP54803 685 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 GSDMDP57764 484 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 CREB5Q02930 508 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 DHX9Q08211 1270 aaKnown RBP8.24□□□□□ -1.09
USP40-216ENST00000485943 MESDQ14696 234 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 SMTNL2Q2TAL5 461 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 BOLA3Q53S33 107 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 CCDC181Q5TID7 509 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 FAM46CQ5VWP2 391 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 ZNF776Q68DI1 518 aaPredicted RBP8.24□□□□□ -1.09
USP40-216ENST00000485943 LAIR1Q6GTX8 287 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 PLEKHA7Q6IQ23 1121 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 CYP2U1Q7Z449 544 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 ADAT2Q7Z6V5 191 aaKnown RBP8.24□□□□□ -1.09
USP40-216ENST00000485943 ALYREFQ86V81 257 aaKnown RBP8.24□□□□□ -1.09
USP40-216ENST00000485943 TMPRSS6Q8IU80 811 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 TMTC1Q8IUR5 882 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 CCDC170Q8IYT3 715 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 CCDC116Q8IYX3 515 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 GPR161Q8N6U8 529 aaKnown RBP8.24□□□□□ -1.09
USP40-216ENST00000485943 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP40-216ENST00000485943 OR2T3Q8NH03 318 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 FNIP1Q8TF40 1166 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 GAB3Q8WWW8 586 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 OR8D1Q8WZ84 308 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 NTAN1Q96AB6 310 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 PPP1R16AQ96I34 528 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 DNAJC7Q99615 494 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 FERMT1Q9BQL6 677 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 CALN1Q9BXU9 219 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 ISCUQ9H1K1 167 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 OSBPL2Q9H1P3 480 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 RETREG1Q9H6L5 497 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 SP110Q9HB58 689 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 SPTLC3Q9NUV7 552 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 ARHGAP20Q9P2F6 1191 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 IMPACTQ9P2X3 320 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 CYP8B1Q9UNU6 501 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP40-216ENST00000485943 SNX10Q9Y5X0 201 aa8.24□□□□□ -1.09
USP40-216ENST00000485943 THADAQ6YHU6 1953 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 A0A0A0MRY4 1105 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 ILVBLA1L0T0 632 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 DFFAO00273 331 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 BUB1O43683 1085 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 PAPSS2O95340 614 aaPredicted RBP8.23□□□□□ -1.09
USP40-216ENST00000485943 KRT7P08729 469 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 CISD3P0C7P0 127 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 TMEM253P0C7T8 217 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 RHOQP17081 205 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 L1CAMP32004 1257 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 NBL1P41271 181 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms