RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NDST4Q9H3R1 872 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CCDC86Q9H6F5 360 aaKnown RBP12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PCDHGA1Q9Y5H4 931 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SYNJ2BP-COX16A0A087WUM0 186 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3DA0A087WVF3 549 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3IA0A087WXS9 549 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3EA0A087X179 549 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3KA0A087X1G2 549 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3FA6NER0 549 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3LB9A6J9 549 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PLK4O00444 970 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 YKT6O15498 198 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RTN2O75298 545 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CTSLP07711 333 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 C1SP09871 688 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3HP0C7X1 549 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SRCP12931 536 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 HOXB3P14651 431 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ERCC5P28715 1186 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 KRT9P35527 623 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 NUDT1P36639 197 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ANP32AP39687 249 aaKnown RBP12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 MTIF2P46199 727 aaKnown RBP12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 NUMBP49757 651 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SNX16P57768 344 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 BPIFB4P59827 614 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 IL9RQ01113 521 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CNTN1Q12860 1018 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 NME3Q13232 169 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ZNF177Q13360 481 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 VWA3BQ502W6 1294 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ALFQ53S48 1182 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 KLHDC7AQ5VTJ3 777 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SFMBT2Q5VUG0 894 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3GQ6DHY5 549 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3CQ6IPX1 549 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 NAPEPLDQ6IQ20 393 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TRNP1Q6NT89 227 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ARCQ7LC44 396 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 MARCH9Q86YJ5 346 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 GATAD2AQ86YP4 633 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CREBRFQ8IUR6 639 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBC1D3Q8IZP1 549 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 OR8D1Q8WZ84 308 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RNF34Q969K3 372 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SKA1Q96BD8 255 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SERAC1Q96JX3 654 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PLCB1Q9NQ66 1216 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TMEM51Q9NW97 253 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 COX16Q9P0S2 106 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TMEM59LQ9UK28 342 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 LHX6Q9UPM6 363 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CEP83Q9Y592 693 aa12.58□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TRABD2BA6NFA1 517 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RNF103O00237 685 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ZNF821O75541 412 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ENDOD1O94919 500 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 F9P00740 461 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PRKCSHP14314 528 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CYP11B1P15538 503 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 EPHA8P29322 1005 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 GGCXP38435 758 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 OVGP1Q12889 678 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 BNIP3Q12983 259 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 DRAP1Q14919 205 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SLC25A52Q3SY17 297 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ACBD5Q5T8D3 534 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PIP5KL1Q5T9C9 394 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 FAM46CQ5VWP2 391 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 Q6ZVU0 165 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 DSG4Q86SJ6 1040 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SETD3Q86TU7 594 aaPredicted RBP12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TMPRSS12Q86WS5 348 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 XYLT1Q86Y38 959 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TMEM145Q8NBT3 493 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TMIEQ8NEW7 156 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 OR2A12Q8NGT7 310 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PIP4K2CQ8TBX8 421 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 C18orf8Q96DM3 657 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TUBGCP2Q9BSJ2 902 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TKTL2Q9H0I9 626 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SIK2Q9H0K1 926 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CLSTN2Q9H4D0 955 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 WDCPQ9H6R7 721 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 GDF3Q9NR23 364 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 AASDHPPTQ9NRN7 309 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 VPS28Q9UK41 221 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 DMTF1Q9Y222 760 aa12.57□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 A0A0D9SEW6 157 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 E9PAM4 449 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 K7ERQ8 282 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ENC1O14682 589 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SMAD6O43541 496 aaKnown RBP12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SNAP91O60641 907 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ZMPSTE24O75844 475 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CDK4P11802 303 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 FLT3P36888 993 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 INAVAQ3KP66 663 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms