RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TMPRSS3P57727 454 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 UBE4AQ14139 1066 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 SAFBQ15424 915 aaKnown RBP eCLIP3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 SYCP2LQ5T4T6 812 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 ADAM5Q6NVV9 412 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 CCDC25Q86WR0 208 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 CAMK1DQ8IU85 385 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 ADPRHL1Q8NDY3 354 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 OR14A16Q8NHC5 309 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 FAM110DQ8TAY7 271 aaPredicted RBP3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 SLC39A13Q96H72 371 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 SNX27Q96L92 541 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 PNPLA8Q9NP80 782 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 RGL1Q9NZL6 768 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 DTNAQ9Y4J8 743 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 LINC01553A4QN01 128 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 TULP2O00295 520 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 KCNJ13O60928 360 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 PEX14O75381 377 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 LDLRP01130 860 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 CYP3A4P08684 503 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 RHBDL3P58872 404 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 TLE3Q04726 772 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 TRAF2Q12933 501 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 GRM4Q14833 912 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 MAPKAPK3Q16644 382 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 IL31Q6EBC2 164 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 AAGABQ6PD74 315 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 DSTYKQ6XUX3 929 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 TCP11L2Q8N4U5 519 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 SVIPQ8NHG7 77 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 FAR2Q96K12 515 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 SNX13Q9Y5W8 968 aa3.58□□□□□ -1.84
CCDC88A-212ENST00000474059 ANO9A1A5B4 782 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 POM121BA6NF01 834 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 NPIPB11E5RHQ5 1161 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 KPNA5O15131 536 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 CER1O95813 267 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 ALDOAP04075 364 aaKnown RBP3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 SERPINB2P05120 415 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 NBPF7P0C2Y1 421 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 IDEP14735 1019 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 CHRNA5P30532 468 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 AVPR1AP37288 418 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 CASP5P51878 434 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 NEK3P51956 506 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 HDAC1Q13547 482 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 DCUN1D3Q8IWE4 304 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 CCDC150Q8NCX0 1101 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 CLEC4CQ8WTT0 213 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 NAA15Q9BXJ9 866 aaKnown RBP3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 GFRA4Q9GZZ7 299 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 NUP62CLQ9H1M0 184 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 ZDHHC7Q9NXF8 308 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 AGO1Q9UL18 857 aaKnown RBP3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 SLC4A4Q9Y6R1 1079 aa3.57□□□□□ -1.84
CCDC88A-212ENST00000474059 IGHV4-28A0A0C4DH34 117 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 FAM234BA2RU67 622 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 RHPN2P1A8MT19 583 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 PMM2O15305 246 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 AFPP02771 609 aaKnown RBP3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 SRGAP2BP0DMP2 458 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 UNGP13051 313 aaPredicted RBP3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 SLC5A1P13866 664 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 PICALMQ13492 652 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 CSHL1Q14406 222 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 SLC39A14Q15043 492 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 HLFQ16534 295 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 SETMARQ53H47 684 aaPredicted RBP3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 ERAP2Q6P179 960 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 KLBQ86Z14 1044 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 ZNF114Q8NC26 417 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 ZNF700Q9H0M5 742 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 RAB21Q9UL25 225 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 MAN2B2Q9Y2E5 1009 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 PKP3Q9Y446 797 aa3.56□□□□□ -1.84
CCDC88A-212ENST00000474059 TCRBV7S3A2A0A539 114 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 PRAC2D3DTV9 90 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 XPNPEP2O43895 674 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 LMX1BO60663 402 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 PQBP1O60828 265 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 KLRC2P26717 231 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 STAT1P42224 750 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 BIRC2Q13490 618 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 FCN2Q15485 313 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 ANKRD40Q6AI12 368 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 RETSATQ6NUM9 610 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 MARK2Q7KZI7 788 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 TTC30AQ86WT1 665 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 KRTAP7-1Q8IUC3 87 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 FAM185AQ8N0U4 392 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 HORMAD2Q8N7B1 307 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 PARD3BQ8TEW8 1205 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 IL17FQ96PD4 163 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 RPS6KC1Q96S38 1066 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 SLC25A33Q9BSK2 321 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 COLEC11Q9BWP8 271 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 ACTR5Q9H9F9 607 aaPredicted RBP3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 IL36RNQ9UBH0 155 aa3.55□□□□□ -1.84
CCDC88A-212ENST00000474059 TRPC5Q9UL62 973 aaPredicted RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms