RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SLC4A8	Q2Y0W8	1093 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	C5orf22	Q49AR2	442 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	ARL13A	Q5H913	290 aa	Predicted RBP	4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	FAM171A1	Q5VUB5	890 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	ISM2	Q6H9L7	571 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	NAPEPLD	Q6IQ20	393 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	ACAD10	Q6JQN1	1059 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	LRIG3	Q6UXM1	1119 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	ADGRG6	Q86SQ4	1221 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	TCP11L2	Q8N4U5	519 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	SCAI	Q8N9R8	606 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	PPHLN1	Q8NEY8	458 aa	Known RBP	4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	TNIP2	Q8NFZ5	429 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	TBC1D22A	Q8WUA7	517 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	HDAC7	Q8WUI4	952 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	RAB40A	Q8WXH6	277 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	KAT2A	Q92830	837 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	ELP4	Q96EB1	424 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	SIGLEC11	Q96RL6	698 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	INTS2	Q9H0H0	1204 aa	Known RBP	4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	LMAN2L	Q9H0V9	348 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	MROH8	Q9H579	483 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	SLITRK6	Q9H5Y7	841 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	PAPOLB	Q9NRJ5	636 aa	Known RBP	4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	FBXO40	Q9UH90	709 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	FBXO4	Q9UKT5	387 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	KIR2DS5	A0A0G2JLQ3	304 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	SMIM35	A0A1B0GVV1	85 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	OR6C68	A6NDL8	312 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	CGB1	A6NKQ9	187 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044		F8W810	466 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	KIR2DS3	K7RE56	304 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	PRPF4	O43172	522 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	MSI1	O43347	362 aa	Known RBP	4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	HBP1	O60381	514 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	CNOT3	O75175	753 aa	Known RBP	4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	NEURL1	O76050	574 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	TMEM63A	O94886	807 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	MBD4	O95243	580 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	NFATC1	O95644	943 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	F9	P00740	461 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	CD4	P01730	458 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	ATP1A3	P13637	1013 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	ABCD3	P28288	659 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	EPHB2	P29323	1055 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	MPG	P29372	298 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	CCT4	P50991	539 aa	Known RBP	4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	CASP6	P55212	293 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	RPP30	P78346	268 aa	Known RBP	4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	GALNT2	Q10471	571 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	GALNT3	Q14435	633 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	NAA25	Q14CX7	972 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	RPE65	Q16518	533 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	SLC18A3	Q16572	532 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	AP5B1	Q2VPB7	878 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZNF766	Q5HY98	468 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	INO80C	Q6PI98	192 aa	Predicted RBP	4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	CYB5R4	Q7L1T6	521 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	ARMC8	Q8IUR7	673 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	TMEM217	Q8N7C4	229 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	RUFY2	Q8WXA3	655 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZUFSP	Q96AP4	578 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	SKA1	Q96BD8	255 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	TEFM	Q96QE5	360 aa	Known RBP	4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	SH2D3A	Q9BRG2	576 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZHX3	Q9H4I2	956 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	ADARB2	Q9NS39	739 aa	Known RBP	4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	KLHL13	Q9P2N7	655 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	C11orf21	Q9P2W6	132 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	AGO2	Q9UKV8	859 aa	Known RBP	4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	ARHGAP26	Q9UNA1	814 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	SLC8A2	Q9UPR5	921 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	ICK	Q9UPZ9	632 aa		4.15	□□□□□ -1.75
PTCD3-209	ENST00000472044	TRBV5-3	A0A0A0MS03	114 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	C17orf113	A0A1B0GUU1	675 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	DPPA5	A6NC42	116 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	CXorf65	A6NEN9	183 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	FOXO6	A8MYZ6	492 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044		E5RJQ4	531 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	MASP2	O00187	686 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	PER2	O15055	1255 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	STRN	O43815	780 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	TLR2	O60603	784 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	DDAH2	O95865	285 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	CELA2A	P08217	269 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	TNFAIP3	P21580	790 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	CD38	P28907	300 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	RXRG	P48443	463 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	CYP2J2	P51589	502 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	CDH15	P55291	814 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	PTP4A2	Q12974	167 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	SIM2	Q14190	667 aa	Predicted RBP	4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	MIDN	Q504T8	468 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	TTC39A	Q5SRH9	613 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	TMEM268	Q5VZI3	342 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	KRTAP5-3	Q6L8H2	238 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	SLC18B1	Q6NT16	456 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	AAGAB	Q6PD74	315 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	DSTYK	Q6XUX3	929 aa		4.14	□□□□□ -1.75

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