RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ZNF512Q96ME7 567 aaPredicted RBP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 PKP2Q99959 881 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 SUDS3Q9H7L9 328 aaPredicted RBP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 KIAA1257Q9ULG3 409 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 A0A096LPK6 155 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 VILLO15195 856 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 STRNO43815 780 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 CCNT2O60583 730 aaKnown RBP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 CCDC130P13994 396 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 NME5P56597 212 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 RALGDSQ12967 914 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 BOLA3Q53S33 107 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 PITRM1Q5JRX3 1037 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 AAGABQ6PD74 315 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 TTC30AQ86WT1 665 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 MYO1HQ8N1T3 1032 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 HTR3CQ8WXA8 447 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 LENG1Q96BZ8 264 aaPredicted RBP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 DGCR14Q96DF8 476 aaKnown RBP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 RTP4Q96DX8 246 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 MAML3Q96JK9 1138 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 KCNK16Q96T55 309 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 SLC4A5Q9BY07 1137 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 IL1RL2Q9HB29 575 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 AKT3Q9Y243 479 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 BIRC5O15392 142 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 SUPT3HO75486 399 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 PTPN1P18031 435 aaKnown RBP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 MX2P20592 715 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 SERPINB9P50453 376 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 RBP5P82980 135 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 SLC9A4Q6AI14 798 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 ARCQ7LC44 396 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 LILRA2Q8N149 483 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 UPF1Q92900 1129 aaKnown RBP eCLIP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 ATP6V1E2Q96A05 226 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 TRPV6Q9H1D0 765 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 C1orf21Q9H246 121 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 DTLQ9NZJ0 730 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 KLHL8Q9P2G9 620 aaPredicted RBP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 GTF2IRD1Q9UHL9 959 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 MBLAC1A4D2B0 266 aaPredicted RBP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 PIK3R1P27986 724 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 ADAM17P78536 824 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 TBCCQ15814 346 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 LSM12Q3MHD2 195 aaKnown RBP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 MAP3K21Q5TCX8 1036 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 TMEM110Q86TL2 294 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 LCA5Q86VQ0 697 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 CDKL3Q8IVW4 592 aaPredicted RBP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 TTC39CQ8N584 583 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 USP33Q8TEY7 942 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 FCRL3Q96P31 734 aaPredicted RBP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 MRPL45Q9BRJ2 306 aaKnown RBP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 DPEP3Q9H4B8 488 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 PLEKHA5Q9HAU0 1116 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 SNX13Q9Y5W8 968 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 C9JVG2 144 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 MFSD11O43934 449 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 PIGNO95427 931 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 TSPAN8P19075 237 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 RPL5P46777 297 aaKnown RBP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 MYBPC1Q00872 1141 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 CERCAMQ5T4B2 595 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 FSTL4Q6MZW2 842 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 ANKRD23Q86SG2 305 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 SLC35F5Q8WV83 523 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 KIF12Q96FN5 646 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 SPON1Q9HCB6 807 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 CYP4F12Q9HCS2 524 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 PNPLA8Q9NP80 782 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 DNAAF2Q9NVR5 837 aaKnown RBP12.67□□□□□ -0.38
HDAC4-208ENST00000463007 HESX1Q9UBX0 185 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 DCDC2Q9UHG0 476 aa12.67□□□□□ -0.38
HDAC4-208ENST00000463007 SMIM18P0DKX4 95 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 PLK1P53350 603 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 CCNA1P78396 465 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 MYBPC3Q14896 1274 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 DCAF4L1Q3SXM0 396 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 DCAF6Q58WW2 860 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 FSCBQ5H9T9 825 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 BNC2Q6ZN30 1099 aaPredicted RBP12.66□□□□□ -0.38
HDAC4-208ENST00000463007 GPR142Q7Z601 462 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 CTU1Q7Z7A3 348 aaKnown RBP12.66□□□□□ -0.38
HDAC4-208ENST00000463007 KBTBD6Q86V97 674 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 KYQ8NBH2 561 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 MIPOL1Q8TD10 442 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 HAPLN3Q96S86 360 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 CCT7Q99832 543 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 GATA5Q9BWX5 397 aaPredicted RBP12.66□□□□□ -0.38
HDAC4-208ENST00000463007 NT5C1AQ9BXI3 368 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 IARS2Q9NSE4 1012 aaKnown RBP12.66□□□□□ -0.38
HDAC4-208ENST00000463007 HNRNPLP14866 589 aaKnown RBP eCLIP12.66□□□□□ -0.382e-10■■□□□ 13.2
HDAC4-208ENST00000463007 MTTPP55157 894 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 IFRD2Q12894 506 aaPredicted RBP12.66□□□□□ -0.38
HDAC4-208ENST00000463007 CEACAM7Q14002 265 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 SOWAHAQ2M3V2 549 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 PGM2L1Q6PCE3 622 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms