RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 MROH9Q5TGP6 573 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 UNC93AQ86WB7 457 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 HEATR4Q86WZ0 1026 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 SIX5Q8N196 739 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 LRRC52Q8N7C0 313 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 GRPEL2Q8TAA5 225 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 AGR3Q8TD06 166 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 ATG4AQ8WYN0 398 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 RORBQ92753 470 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 C19orf60Q96EN9 201 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 TRIM62Q9BVG3 475 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 BBS2Q9BXC9 721 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 COPS7BQ9H9Q2 264 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-202ENST00000460333 PREBQ9HCU5 417 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 TRNAU1APQ9NX07 287 aaKnown RBP6.31□□□□□ -1.4
VPS13D-202ENST00000460333 DPP7Q9UHL4 492 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 SALL4Q9UJQ4 1053 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 FADS3Q9Y5Q0 445 aa6.31□□□□□ -1.4
VPS13D-202ENST00000460333 MEI4A8MW99 385 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 HOXA2O43364 376 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CST8O60676 142 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 GNRH1P01148 92 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PROCP04070 461 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 MPOP05164 745 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 NFICP08651 508 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PAX3P23760 479 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 GNL1P36915 607 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 NOMO3P69849 1222 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 DMC1Q14565 340 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 TAB1Q15750 504 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PPP6R3Q5H9R7 873 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PRAMEF19Q5SWL8 479 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 C1orf220Q5T0J3 134 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 EGFLAMQ63HQ2 1017 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 C15orf39Q6ZRI6 1047 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 NEK10Q6ZWH5 1172 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 OTOAQ7RTW8 1153 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 TRABD2AQ86V40 505 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SFRP1Q8N474 314 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 TDRD5Q8NAT2 981 aaKnown RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 ZNF516Q92618 1163 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PCDHB18PQ96TA0 734 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 LHX5Q9H2C1 402 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PCDH18Q9HCL0 1135 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 RIC8BQ9NVN3 520 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SNTG2Q9NY99 539 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 ARMCX1Q9P291 453 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 TUBGCP4Q9UGJ1 667 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PCSK1NQ9UHG2 260 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 GNPTGQ9UJJ9 305 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 RBBP6Q7Z6E9 1792 aaKnown RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CENPXA8MT69 81 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 TSPAN1O60635 241 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 GJB1P08034 283 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 ATXN3P54252 364 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CAPRIN1Q14444 709 aaKnown RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 USP10Q14694 798 aaKnown RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 FBXO47Q5MNV8 452 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 LRRC38Q5VT99 294 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 ZDHHC17Q8IUH5 632 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 KIAA0319LQ8IZA0 1049 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SLAIN1Q8ND83 568 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SPATA18Q8TC71 538 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 ITPKCQ96DU7 683 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 DCUN1D1Q96GG9 259 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 GAS2L1Q99501 681 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 IARS2Q9NSE4 1012 aaKnown RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 ARHGEF38Q9NXL2 777 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 STAP1Q9ULZ2 295 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PAPPA2Q9BXP8 1791 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CSDE1O75534 798 aaKnown RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 VNN1O95497 513 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 LDLRP01130 860 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CYP1A1P04798 512 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CHRNB2P17787 502 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PRDX6P30041 224 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 RIPPLY1Q0D2K3 151 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 NEDD8Q15843 81 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SPANXN2Q5MJ10 180 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 TLDC1Q6P9B6 456 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 TTC30AQ86WT1 665 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 KRT73Q86Y46 540 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 AHI1Q8N157 1196 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 TMEM199Q8N511 208 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 NPLOC4Q8TAT6 608 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 FAM149B1Q96BN6 582 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SPATA17Q96L03 361 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CLEC4MQ9H2X3 399 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 XPNPEP3Q9NQH7 507 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 ADAM30Q9UKF2 790 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CROTQ9UKG9 612 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PCDHGC3Q9UN70 934 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 IPPQ9Y573 584 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 DICER1Q9UPY3 1922 aaKnown RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SAGE2PA6NJ88 616 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PRR23D1E9PI22 279 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 TRIM38O00635 465 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms