RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 USP34Q70CQ2 3546 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 PRR5-ARHGAP8B1AHC4 643 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 GSC2O15499 205 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ZNF623O75123 536 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ITGA2BP08514 1039 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ODC1P11926 461 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ALADP13716 330 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ZFXP17010 805 aaPredicted RBP9.67□□□□□ -0.86
CUX1-206ENST00000437600 NFKB1P19838 968 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 PTPN4P29074 926 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ARHGAP8P85298 464 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 CDK16Q00536 496 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 STX3Q13277 289 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ITGA9Q13797 1035 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ZNF460Q14592 562 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 NOMO2Q5JPE7 1267 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 GLB1LQ6UWU2 654 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 STRA8Q7Z7C7 330 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 RASSF3Q86WH2 238 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 TTC9BQ8N6N2 239 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ZNF419Q96HQ0 510 aaPredicted RBP9.67□□□□□ -0.86
CUX1-206ENST00000437600 NSL1Q96IY1 281 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 DNAJC16Q9Y2G8 782 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 MTO1Q9Y2Z2 717 aaKnown RBP9.67□□□□□ -0.86
CUX1-206ENST00000437600 NDC80O14777 642 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 PEX11AO75192 247 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 LTFP02788 710 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 SLC39A12Q504Y0 691 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 FAM117BQ6P1L5 589 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ZNF598Q86UK7 904 aaKnown RBP9.67□□□□□ -0.86
CUX1-206ENST00000437600 ZNF483Q8TF39 744 aaPredicted RBP9.67□□□□□ -0.86
CUX1-206ENST00000437600 MCUR1Q96AQ8 359 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 ZNF570Q96NI8 536 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 CRISPLD2Q9H0B8 497 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 PPCSQ9HAB8 311 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 SSU72Q9NP77 194 aaKnown RBP9.67□□□□□ -0.86
CUX1-206ENST00000437600 PNPLA8Q9NP80 782 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 TBC1D13Q9NVG8 400 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 SHROOM3Q8TF72 1996 aa9.67□□□□□ -0.86
CUX1-206ENST00000437600 C9IYK1 514 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 SMAPO00193 183 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 DCLK1O15075 740 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 KRT36O76013 467 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 BPGMP07738 259 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 NMBRP28336 390 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 PCSK1P29120 753 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 GRIK1P39086 918 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 GJA8P48165 433 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 YWHAHQ04917 246 aaPredicted RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 CCDC15Q0P6D6 951 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 GRIK3Q13003 919 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 RIPK1Q13546 671 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 POU6F1Q14863 301 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 PDK1Q15118 436 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 DDR2Q16832 855 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 FSTL4Q6MZW2 842 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 ZNF280DQ6N043 979 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 DCLK2Q8N568 766 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 HIPK4Q8NE63 616 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 MAGEC3Q8TD91 643 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 NT5C3BQ969T7 300 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 SMARCD1Q96GM5 515 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 FAM124BQ9H5Z6 455 aaPredicted RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 XAB2Q9HCS7 855 aaKnown RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 IARS2Q9NSE4 1012 aaKnown RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 GOLGA8QA0A0J9YX86 632 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 GOLGA8OA6NCC3 632 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 GOLGA8NF8WBI6 632 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 CCL22O00626 93 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 PHGDHO43175 533 aaKnown RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 SPAG6O75602 509 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 CCND1P24385 295 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 RAB27AP51159 221 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 MXRA7P84157 204 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 CTBP1Q13363 440 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 DPYSQ14117 519 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 PARP6Q2NL67 630 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 INTS6LQ5JSJ4 861 aaKnown RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 LRRC8BQ6P9F7 803 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 SLC24A5Q71RS6 500 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 TAC4Q86UU9 113 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 METTL23Q86XA0 190 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 TMEM86AQ8N2M4 240 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 CNTD1Q8N815 330 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 SKA1Q96BD8 255 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 ARMC5Q96C12 935 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 BTBD10Q9BSF8 475 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 THTPAQ9BU02 230 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 MLPHQ9BV36 600 aaPredicted RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 FTHL17Q9BXU8 183 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 SPATS2LQ9NUQ6 558 aaKnown RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 FBXW11Q9UKB1 542 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 CDH9Q9ULB4 789 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 VANGL2Q9ULK5 521 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 C15orf41Q9Y2V0 281 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 ENO4A6NNW6 628 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 PMPCBO75439 489 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 TBX18O95935 607 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 PRKCGP05129 697 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 POLBP06746 335 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms