RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ARIH1Q9Y4X5 557 aaPredicted RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 SDR42E2A6NKP2 422 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 NCAM2O15394 837 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 MTSS1O43312 755 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 MFSD11O43934 449 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 DNAJC6O75061 913 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 SOD2P04179 222 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 ATP5BP06576 529 aaKnown RBP15.15■□□□□ 0.02
USP4-203ENST00000415188 EZRP15311 586 aaKnown RBP15.15■□□□□ 0.02
USP4-203ENST00000415188 RPL9P32969 192 aaKnown RBP15.15■□□□□ 0.02
USP4-203ENST00000415188 MTM1Q13496 603 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 DPYSQ14117 519 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 DCAF6Q58WW2 860 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 WLSQ5T9L3 541 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 WSCD1Q658N2 575 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 ATG16L1Q676U5 607 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 TRIM67Q6ZTA4 783 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 PAQR9Q6ZVX9 377 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 CDKL2Q92772 493 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 FAM111AQ96PZ2 611 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 KLF6Q99612 283 aaPredicted RBP15.15■□□□□ 0.02
USP4-203ENST00000415188 GOLGA2P5Q9HBQ8 144 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 NPHS2Q9NP85 383 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 DZANK1Q9NVP4 752 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 CACNG4Q9UBN1 327 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 BAIAP2L1Q9UHR4 511 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 LNPEPQ9UIQ6 1025 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 ZFP69BQ9UJL9 534 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 CDH9Q9ULB4 789 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 PLLPQ9Y342 182 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 MAD1L1Q9Y6D9 718 aa15.15■□□□□ 0.02
USP4-203ENST00000415188 TMEM221A6NGB7 291 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 CXorf49A8MYA2 514 aaPredicted RBP15.14■□□□□ 0.01
USP4-203ENST00000415188 C2CD4DB7Z1M9 353 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 I3L4J1 428 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 M0QYT0 321 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 M0R296 226 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 EEF2KO00418 725 aaKnown RBP15.14■□□□□ 0.01
USP4-203ENST00000415188 BIRC5O15392 142 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 RFPL1O75677 317 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 F9P00740 461 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 NEFHP12036 1026 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 PGAM1P18669 254 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 CRHR1P34998 444 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 FRG1Q14331 258 aaKnown RBP15.14■□□□□ 0.01
USP4-203ENST00000415188 MDH1BQ5I0G3 518 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 RAB41Q5JT25 222 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 FAM91A1Q658Y4 838 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 TMC5Q6UXY8 1006 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 RFX8Q6ZV50 586 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 FAM35AQ86V20 835 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 DEPDC1BQ8WUY9 529 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 SENP8Q96LD8 212 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 C7orf26Q96N11 449 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 NECTIN4Q96NY8 510 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 SYT15Q9BQS2 421 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 HERC2P3Q9BVR0 1158 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 EMILIN2Q9BXX0 1053 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 CD248Q9HCU0 757 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 MRPL17Q9NRX2 175 aaKnown RBP15.14■□□□□ 0.01
USP4-203ENST00000415188 KRT82Q9NSB4 513 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 MUC6Q6W4X9 2439 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 WDR91A4D1P6 747 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 RNF103O00237 685 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 DCLK1O15075 740 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 MAP3K6O95382 1288 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 EFEMP2O95967 443 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 URODP06132 367 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 THP07101 528 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 KRT16P08779 473 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 CSH1P0DML2 217 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 CSH2P0DML3 217 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 CCND1P24385 295 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 PCSK1P29120 753 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 MTHFRP42898 656 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 CLCN4P51793 760 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 TKTL1P51854 596 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 ARFIP2P53365 341 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 DAOAP59103 153 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 ARL13BQ3SXY8 428 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 SYCP2LQ5T4T6 812 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 DENND5BQ6ZUT9 1274 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 RNF168Q8IYW5 571 aaPredicted RBP15.14■□□□□ 0.01
USP4-203ENST00000415188 SCML4Q8N228 414 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 PYROXD2Q8N2H3 581 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 IRGQQ8WZA9 623 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 P2RY11Q96G91 374 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 B3GALT6Q96L58 329 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 RIPOR3Q96MK2 946 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 TRIM62Q9BVG3 475 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 SMYD2Q9NRG4 433 aa15.14■□□□□ 0.01
USP4-203ENST00000415188 DDX43Q9NXZ2 648 aaKnown RBP15.14■□□□□ 0.01
USP4-203ENST00000415188 ERI2A8K979 691 aaKnown RBP15.13■□□□□ 0.01
USP4-203ENST00000415188 CLDN5O00501 218 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 AP1G2O75843 785 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 PIAS1O75925 651 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 ADRA1BP35368 520 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 NIPAL4Q0D2K0 466 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 IFRD2Q12894 506 aaPredicted RBP15.13■□□□□ 0.01
USP4-203ENST00000415188 GRIK3Q13003 919 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms