RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 MOV10Q9HCE1 1003 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 GMIPQ9P107 970 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 SYNMO15061 1565 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 SRCP12931 536 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 COX7A2P14406 83 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 TLX1P31314 330 aaPredicted RBP13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 CSHL1Q14406 222 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 GRTP1Q5TC63 336 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 AAGABQ6PD74 315 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 STK32AQ8WU08 396 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 HPDLQ96IR7 371 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 C1QTNF7Q9BXJ2 289 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 PSMD13Q9UNM6 376 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 NCKAP1Q9Y2A7 1128 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 GRIN2AQ12879 1464 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 FCHO1O14526 889 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 VIL1P09327 827 aaKnown RBP13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 GARTP22102 1010 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 BAG6P46379 1132 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 SLC25A25Q6KCM7 469 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 PYDC1Q8WXC3 89 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 CPNE1Q99829 537 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 LGR6Q9HBX8 967 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 TBC1D13Q9NVG8 400 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 ATXN10Q9UBB4 475 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 A0A1W2PQJ5 194 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 TEX33O43247 280 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 RCAN1P53805 252 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 SHQ1Q6PI26 577 aaKnown RBP13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 HNRNPLLQ8WVV9 542 aaKnown RBP13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 NMRAL1Q9HBL8 299 aa13.52□□□□□ -0.24
CCDC88A-204ENST00000413716 LTFP02788 710 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 PNPLA4P41247 253 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 POLD2P49005 469 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 MED22Q15528 200 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 TRMT11Q7Z4G4 463 aaKnown RBP13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 ATXN3LQ9H3M9 355 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 SHROOM2Q13796 1616 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 NCAM2O15394 837 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 GIMD1P0DJR0 217 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 MTF1Q14872 753 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 PIK3R6Q5UE93 754 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 ARHGAP36Q6ZRI8 547 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 SLC25A23Q9BV35 468 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 RAD17O75943 681 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 SERPINE1P05121 402 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 SP100P23497 879 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 S100A3P33764 101 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 TMED8Q6PL24 325 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 ZNF567Q8N184 647 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 ATL1Q8WXF7 558 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 IGSF9BQ9UPX0 1349 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 DHX15O43143 795 aaKnown RBP13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 TAS2R41P59536 307 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 LSM3P62310 102 aaKnown RBP13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 HSDL1Q3SXM5 330 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 TMPRSS11AQ6ZMR5 421 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 NT5DC3Q86UY8 548 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 PHF21BQ96EK2 531 aa13.52□□□□□ -0.25
CCDC88A-204ENST00000413716 A0A1B0GTH6 734 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 CES1P23141 567 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 ACOT2P49753 483 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 MBTD1Q05BQ5 628 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 ENPEPQ07075 957 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 MPP3Q13368 585 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 FAM76BQ5HYJ3 339 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 NET1Q7Z628 596 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 SLC26A11Q86WA9 606 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 CARNMT1Q8N4J0 409 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 TSEN15Q8WW01 171 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 PLEKHA1Q9HB21 404 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 SLC24A2Q9UI40 661 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 PLA2G4CQ9UP65 541 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 ARL5AQ9Y689 179 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 BOLA3Q53S33 107 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 FOXP4Q8IVH2 680 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 EVA1BQ9NVM1 165 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 RRN3P2A6NIE6 340 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 REM1O75628 298 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 BBOX1O75936 387 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 IFNA7P01567 189 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 PHKG2P15735 406 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 MRPS22P82650 360 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 BMT2Q1RMZ1 405 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 CBWD3Q5JTY5 395 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 CBWD5Q5RIA9 395 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 NOTUMQ6P988 496 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 IL27RAQ6UWB1 636 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 FMR1NBQ8N0W7 255 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 ZMYM5Q9UJ78 669 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 PLB1Q6P1J6 1458 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 MAGEA6P43360 314 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 ADAM8P78325 824 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 RPP38P78345 283 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 LSM14AQ8ND56 463 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 RDH8Q9NYR8 311 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 A0A087X1B8 175 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 H7C4K7 107 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 CCNYL3P0C7X3 344 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 VMACQ2NL98 169 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms