RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SLC2A14Q8TDB8 520 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 USP33Q8TEY7 942 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 APBA2Q99767 749 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 FERMT1Q9BQL6 677 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 RBM38Q9H0Z9 239 aaKnown RBP21.38■■□□□ 1.01
CTCF-202ENST00000401394 C2orf40Q9H1Z8 148 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 AS3MTQ9HBK9 375 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 MORF4L1Q9UBU8 362 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 DPYSL4O14531 572 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 TRIM13O60858 407 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 CDK4P11802 303 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 AKAP5P24588 427 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 ACAT1P24752 427 aaKnown RBP21.38■■□□□ 1.01
CTCF-202ENST00000401394 SULT1E1P49888 294 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 NLRP7Q8WX94 980 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 SLC29A1Q99808 456 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 MTF2Q9Y483 593 aaPredicted RBP21.38■■□□□ 1.01
CTCF-202ENST00000401394 MCM3APO60318 1980 aa21.38■■□□□ 1.01
CTCF-202ENST00000401394 ZBTB24O43167 697 aaPredicted RBP21.37■■□□□ 1.01
CTCF-202ENST00000401394 TSPAN8P19075 237 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 ETFBP38117 255 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 RBP5P82980 135 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 CYLC2Q14093 348 aaPredicted RBP21.37■■□□□ 1.01
CTCF-202ENST00000401394 MAP3K21Q5TCX8 1036 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 TMEM151AQ8N4L1 468 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 ACMSDQ8TDX5 336 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 LRTOMTQ8WZ04 291 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 CAMKK2Q96RR4 588 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 ACE2Q9BYF1 805 aaPredicted RBP21.37■■□□□ 1.01
CTCF-202ENST00000401394 CYP3A43Q9HB55 503 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 TXNRD2Q9NNW7 524 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 SFMBT1Q9UHJ3 866 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 RNF11Q9Y3C5 154 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 CDY2AQ9Y6F7 541 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 CDY1Q9Y6F8 540 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 C9JVG2 144 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 MATN2O00339 956 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 IFRD2Q12894 506 aaPredicted RBP21.37■■□□□ 1.01
CTCF-202ENST00000401394 CTBP1Q13363 440 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 DENND6AQ8IWF6 608 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 TRPM4Q8TD43 1214 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 RPL10LQ96L21 214 aaKnown RBP21.37■■□□□ 1.01
CTCF-202ENST00000401394 C11orf84Q9BUA3 381 aaPredicted RBP21.37■■□□□ 1.01
CTCF-202ENST00000401394 FTHL17Q9BXU8 183 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 TRIM8Q9BZR9 551 aa21.37■■□□□ 1.01
CTCF-202ENST00000401394 TDRKHQ9Y2W6 561 aaKnown RBP21.37■■□□□ 1.01
CTCF-202ENST00000401394 ARL4AP40617 200 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 PPP1R3AQ16821 1122 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 CELF3Q5SZQ8 465 aaKnown RBP21.36■■□□□ 1.01
CTCF-202ENST00000401394 OTUD1Q5VV17 481 aaPredicted RBP21.36■■□□□ 1.01
CTCF-202ENST00000401394 LSMEM2Q8N112 164 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 RNF139Q8WU17 664 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 EIF2AQ9BY44 585 aaKnown RBP21.36■■□□□ 1.01
CTCF-202ENST00000401394 VANGL2Q9ULK5 521 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 RGSL1A5PLK6 1076 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 SPTLC1O15269 473 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 C22orf31O95567 290 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 PIM1P11309 404 aaPredicted RBP21.36■■□□□ 1.01
CTCF-202ENST00000401394 CNTFP26441 200 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 PLK1P53350 603 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 FSCBQ5H9T9 825 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 SLC41A1Q8IVJ1 513 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 NPWQ8N729 165 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 HSPBAP1Q96EW2 488 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 VPS39Q96JC1 886 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 COQ10BQ9H8M1 238 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 CYP4F12Q9HCS2 524 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 C9IYK1 514 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 DENRO43583 198 aaKnown RBP21.36■■□□□ 1.01
CTCF-202ENST00000401394 LIMK2P53671 638 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 GJA9P57773 515 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 ADIGQ0VDE8 80 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 MAP7Q14244 749 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 KIZQ2M2Z5 673 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 B3GNT6Q6ZMB0 384 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 KLRG1Q96E93 195 aa21.36■■□□□ 1.01
CTCF-202ENST00000401394 ILKAPQ9H0C8 392 aaPredicted RBP21.36■■□□□ 1.01
CTCF-202ENST00000401394 COPG1Q9Y678 874 aaKnown RBP21.36■■□□□ 1.01
CTCF-202ENST00000401394 SMIM31A0A1B0GVY4 71 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 TXNP10599 105 aaKnown RBP21.35■■□□□ 1.01
CTCF-202ENST00000401394 CKMT2P17540 419 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 UGT1A6P19224 532 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 GABRB3P28472 473 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 STT3AP46977 705 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 YBX1P67809 324 aaKnown RBP21.35■■□□□ 1.01
CTCF-202ENST00000401394 SEL1L3Q68CR1 1132 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.35■■□□□ 1.01
CTCF-202ENST00000401394 CELF6Q96J87 481 aaKnown RBP21.35■■□□□ 1.01
CTCF-202ENST00000401394 BTBD9Q96Q07 612 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 RUVBL2Q9Y230 463 aaKnown RBP21.35■■□□□ 1.01
CTCF-202ENST00000401394 CITO14578 2027 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 PFDN1O60925 122 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 MPP1Q00013 466 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 ZBTB17Q13105 803 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 TMED1Q13445 227 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 ART3Q13508 389 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 DUS1LQ6P1R4 473 aaKnown RBP21.35■■□□□ 1.01
CTCF-202ENST00000401394 GADL1Q6ZQY3 521 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 RNF135Q8IUD6 432 aa21.35■■□□□ 1.01
CTCF-202ENST00000401394 MFSD6LQ8IWD5 586 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms