RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 UMODL1-AS1Q8N2C9 162 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 SPC24Q8NBT2 197 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 RLN3Q8WXF3 142 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 PTPRN2Q92932 1015 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 ARHGEF2Q92974 986 aaKnown RBP22.23■■□□□ 1.15
CLN3-207ENST00000395653 ZWILCHQ9H900 591 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 INVSQ9Y283 1065 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 EPN1Q9Y6I3 576 aaPredicted RBP22.23■■□□□ 1.15
CLN3-207ENST00000395653 PLXND1Q9Y4D7 1925 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 GOLGA6L6A8MZA4 724 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 CBX4O00257 560 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 ZMPSTE24O75844 475 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 NDUFA10O95299 355 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 SRCP12931 536 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 GOT1P17174 413 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 GLDCP23378 1020 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 ARHGAP25P42331 645 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 YBEYP58557 167 aaPredicted RBP22.22■■□□□ 1.15
CLN3-207ENST00000395653 ZBTB16Q05516 673 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 SLC20A2Q08357 652 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 POLD3Q15054 466 aaPredicted RBP22.22■■□□□ 1.15
CLN3-207ENST00000395653 LPAL2Q16609 132 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 TXNRD3NBQ6F5E7 133 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 RFX8Q6ZV50 586 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 FAM160A2Q8N612 972 aaPredicted RBP22.22■■□□□ 1.15
CLN3-207ENST00000395653 HSPH1Q92598 858 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 RSPH9Q9H1X1 276 aaPredicted RBP22.22■■□□□ 1.15
CLN3-207ENST00000395653 NOL6Q9H6R4 1146 aaKnown RBP22.22■■□□□ 1.15
CLN3-207ENST00000395653 ITM2CQ9NQX7 267 aa22.22■■□□□ 1.15
CLN3-207ENST00000395653 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.22■■□□□ 1.15
CLN3-207ENST00000395653 USP36Q9P275 1121 aaKnown RBP22.22■■□□□ 1.15
CLN3-207ENST00000395653 GPR179Q6PRD1 2367 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 CHD5Q8TDI0 1954 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 DAPK3O43293 454 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 MT-CO1P00395 513 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 ACADMP11310 421 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 BCKDHBP21953 392 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 ACVRL1P37023 503 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 RPS14P62263 151 aaKnown RBP22.21■■□□□ 1.15
CLN3-207ENST00000395653 ARF5P84085 180 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 ELAVL3Q14576 367 aaKnown RBP22.21■■□□□ 1.15
CLN3-207ENST00000395653 DLG2Q15700 870 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 ELF2Q15723 593 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 ZNF776Q68DI1 518 aaPredicted RBP22.21■■□□□ 1.15
CLN3-207ENST00000395653 ATP11CQ8NB49 1132 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 RUBCNQ92622 972 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 LOXL4Q96JB6 756 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 BAG1Q99933 345 aaPredicted RBP22.21■■□□□ 1.15
CLN3-207ENST00000395653 DUSP15Q9H1R2 295 aaPredicted RBP22.21■■□□□ 1.15
CLN3-207ENST00000395653 CWC15Q9P013 229 aaKnown RBP22.21■■□□□ 1.15
CLN3-207ENST00000395653 MBD1Q9UIS9 605 aaPredicted RBP22.21■■□□□ 1.15
CLN3-207ENST00000395653 CYP8B1Q9UNU6 501 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 PCDHA13Q9Y5I0 950 aa22.21■■□□□ 1.15
CLN3-207ENST00000395653 IGHV1OR15-9A0A0B4J2B8 117 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 H3BRJ5 948 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 RNASEH1O60930 286 aaKnown RBP22.2■■□□□ 1.14
CLN3-207ENST00000395653 RHOBTB1O94844 696 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 IPO7O95373 1038 aaKnown RBP22.2■■□□□ 1.14
CLN3-207ENST00000395653 IGLV3-19P01714 112 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 ARL4AP40617 200 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 SSR1P43307 286 aaKnown RBP22.2■■□□□ 1.14
CLN3-207ENST00000395653 SERPINH1P50454 418 aaKnown RBP22.2■■□□□ 1.14
CLN3-207ENST00000395653 PARP15Q460N3 678 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 ACCSLQ4AC99 568 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 PMS2CLQ68D20 193 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 SLC36A4Q6YBV0 504 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 ALYREFQ86V81 257 aaKnown RBP22.2■■□□□ 1.14
CLN3-207ENST00000395653 CACUL1Q86Y37 369 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 FRMD1Q8N878 549 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 CD93Q9NPY3 652 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 GMEB2Q9UKD1 530 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 HPCAL4Q9UM19 191 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 OTOGLQ3ZCN5 2332 aa22.2■■□□□ 1.14
CLN3-207ENST00000395653 RETP07949 1114 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 VAV1P15498 845 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 ERCC2P18074 760 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 TPMTP51580 245 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 NDST2P52849 883 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 HADHBP55084 474 aaKnown RBP22.19■■□□□ 1.14
CLN3-207ENST00000395653 GEMIN4P57678 1058 aaKnown RBP22.19■■□□□ 1.14
CLN3-207ENST00000395653 DPYSQ14117 519 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 MESDQ14696 234 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 LINGO4Q6UY18 593 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 TMEM139Q8IV31 216 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 FAM129BQ96TA1 746 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 NCDNQ9UBB6 729 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 SCML1Q9UN30 329 aa22.19■■□□□ 1.14
CLN3-207ENST00000395653 RASA4BC9J798 803 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 K7ERQ8 282 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 MAP3K13O43283 966 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 RASA4O43374 803 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 KDELR3O43731 214 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 DNTTP04053 509 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 OXTRP30559 389 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 HOXD11P31277 338 aaPredicted RBP22.18■■□□□ 1.14
CLN3-207ENST00000395653 TTC31Q49AM3 519 aaPredicted RBP22.18■■□□□ 1.14
CLN3-207ENST00000395653 SPDYCQ5MJ68 293 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 RAD9BQ6WBX8 426 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 Q6ZVU0 165 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 POLNQ7Z5Q5 900 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms