RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 USP22Q9UPT9 525 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 C2CD2Q9Y426 696 aa-0.44□□□□□ -2.48
RNU6-540P-201ENST00000384622 UBR5O95071 2799 aaPredicted RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 ABCA4P78363 2273 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 TMEM178BH3BS89 294 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 DVL1O14640 695 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 KCNN4O15554 427 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 KCNQ2O43526 872 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 ITM2AO43736 263 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 PRAMEF2O60811 474 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 SNAI1O95863 264 aaPredicted RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 LY6G6DO95868 133 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 RECKO95980 971 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 IGHV3-13P01766 116 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 MELTFP08582 738 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 ACADMP11310 421 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 AKR1A1P14550 325 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 GP9P14770 177 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 GNLYP22749 145 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 LRPAP1P30533 357 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 KPNA1P52294 538 aaPredicted RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 DVL1P1P54792 670 aaPredicted RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 DEUP1Q05D60 604 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 SLC20A2Q08357 652 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 TARDBPQ13148 414 aaKnown RBP eCLIP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF79Q15937 498 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 FSCN1Q16658 493 aaKnown RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 ANO4Q32M45 955 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 OLFM4Q6UX06 510 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 DHRS13Q6UX07 377 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 UBE2R2Q712K3 238 aaPredicted RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 KDELC2Q7Z4H8 507 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 POM121L12Q8N7R1 296 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 TYMSOSQ8TAI1 123 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 OR1F2PQ96R84 312 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 SPAG8Q99932 426 aaPredicted RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 TEX13BQ9BXU2 312 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 PUS3Q9BZE2 481 aaKnown RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 TRIM39Q9HCM9 518 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 ASNSD1Q9NWL6 643 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 NKX1-2Q9UD57 310 aaPredicted RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 FAF1Q9UNN5 650 aaPredicted RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 DNM3Q9UQ16 869 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 VDAC3Q9Y277 283 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 MMACHCQ9Y4U1 282 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 MAP1BP46821 2468 aaKnown RBP-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 COL1A2P08123 1366 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 JMJD1CQ15652 2540 aa-0.45□□□□□ -2.48
RNU6-540P-201ENST00000384622 PRAG1Q86YV5 1406 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 STMND1H3BQB6 276 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 LDB2O43679 373 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 OPA1O60313 960 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 HGFP14210 728 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 GALNSP34059 522 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 HOXD12P35452 270 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 MXI1P50539 228 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 BMXP51813 675 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 ERVK-21P61565 698 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 MRPS9P82933 396 aaKnown RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 TXNL4AP83876 142 aaKnown RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 CCDC15Q0P6D6 951 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 TCTN1Q2MV58 587 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 MUM1Q2TAK8 710 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF284Q2VY69 593 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 ENTPD8Q5MY95 495 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 IRAK1BP1Q5VVH5 260 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 ATF7IPQ6VMQ6 1270 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 GADL1Q6ZQY3 521 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 CYB5R4Q7L1T6 521 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 RNF180Q86T96 592 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 PALB2Q86YC2 1186 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 RHPN2Q8IUC4 686 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 FAM47BQ8NA70 645 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 KCNH5Q8NCM2 988 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 RFWD2Q8NHY2 731 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 SSC4DQ8WTU2 575 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 FIG4Q92562 907 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF419Q96HQ0 510 aaPredicted RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF583Q96ND8 569 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 MAP3K14Q99558 947 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF670Q9BS34 389 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 LRRC61Q9BV99 259 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 YTHDF1Q9BYJ9 559 aaKnown RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 WNT5BQ9H1J7 359 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 METTL5Q9NRN9 209 aaKnown RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 GNL3LQ9NVN8 582 aaKnown RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 THG1LQ9NWX6 298 aaKnown RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 SIDT1Q9NXL6 827 aaKnown RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 KLHL8Q9P2G9 620 aaPredicted RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 TUBE1Q9UJT0 475 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZMYND8Q9ULU4 1186 aaPredicted RBP-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 SHOC2Q9UQ13 582 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 NEU3Q9UQ49 428 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 CGNL1Q0VF96 1302 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 EMSYQ7Z589 1322 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 CELSR3Q9NYQ7 3312 aa-0.46□□□□□ -2.48
RNU6-540P-201ENST00000384622 PTCH1Q13635 1447 aa-0.47□□□□□ -2.48
RNU6-540P-201ENST00000384622 LAMA3Q16787 3333 aa-0.47□□□□□ -2.48
RNU6-540P-201ENST00000384622 DNHD1Q96M86 4753 aa-0.47□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms