RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 SLITRK1Q96PX8 696 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 SMAD5Q99717 465 aaKnown RBP11.97□□□□□ -0.49
PTPN1-201ENST00000371621 HGH1Q9BTY7 390 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 RSAD1Q9HA92 442 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 MAGEE1Q9HCI5 957 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.97□□□□□ -0.49
PTPN1-201ENST00000371621 ABCC6O95255 1503 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 TMEM114B3SHH9 223 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 EIF3DO15371 548 aaKnown RBP eCLIP11.97□□□□□ -0.49
PTPN1-201ENST00000371621 NOS1APO75052 506 aaPredicted RBP11.97□□□□□ -0.49
PTPN1-201ENST00000371621 ADAM23O75077 832 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 CYP1A2P05177 515 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 TGM2P21980 687 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 RPL14P50914 215 aaKnown RBP11.97□□□□□ -0.49
PTPN1-201ENST00000371621 KPNA2P52292 529 aaKnown RBP11.97□□□□□ -0.49
PTPN1-201ENST00000371621 SLC12A3P55017 1021 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 ARL13BQ3SXY8 428 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 ZDHHC13Q8IUH4 622 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 SULF1Q8IWU6 871 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 FAR2Q96K12 515 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 PLA2G12BQ9BX93 195 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 VPS33BQ9H267 617 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 TLE6Q9H808 572 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 CAB39LQ9H9S4 337 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 SIX2Q9NPC8 291 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 MTRRQ9UBK8 725 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 SYNPO2Q9UMS6 1093 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 MRPL11Q9Y3B7 192 aaKnown RBP11.97□□□□□ -0.49
PTPN1-201ENST00000371621 ADGRA2Q96PE1 1338 aa11.97□□□□□ -0.49
PTPN1-201ENST00000371621 TCRBV7S3A2A0A539 114 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 EI24O14681 340 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 HDAC3O15379 428 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 RNASEH2AO75792 299 aaKnown RBP11.96□□□□□ -0.49
PTPN1-201ENST00000371621 FGFR1P11362 822 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 MYL4P12829 197 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 ACAT1P24752 427 aaKnown RBP11.96□□□□□ -0.49
PTPN1-201ENST00000371621 BTG3Q14201 252 aaPredicted RBP11.96□□□□□ -0.49
PTPN1-201ENST00000371621 RAB39AQ14964 217 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 SNX17Q15036 470 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 COLEC12Q5KU26 742 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 TRMT10BQ6PF06 316 aaKnown RBP11.96□□□□□ -0.49
PTPN1-201ENST00000371621 SPESP1Q6UW49 350 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 TTYH2Q9BSA4 534 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 NAA50Q9GZZ1 169 aaKnown RBP11.96□□□□□ -0.49
PTPN1-201ENST00000371621 MOV10Q9HCE1 1003 aaKnown RBP11.96□□□□□ -0.49
PTPN1-201ENST00000371621 NSMCE4AQ9NXX6 385 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 MTMR4Q9NYA4 1195 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 PLK2Q9NYY3 685 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 UBP1Q9NZI7 540 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 SLC17A6Q9P2U8 582 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 ATP6V1HQ9UI12 483 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 I3L521 148 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 ATE1O95260 518 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 FKBP9O95302 570 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 GDF10P55107 478 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 ZNF699Q32M78 642 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 SLC27A3Q5K4L6 730 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 FKBP9P1Q75LS8 142 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 CHSY1Q86X52 802 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 TDRPQ86YL5 185 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 CCDC28AQ8IWP9 274 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 KATNAL2Q8IYT4 538 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 GPD1LQ8N335 351 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 ASCC1Q8N9N2 400 aaKnown RBP11.96□□□□□ -0.49
PTPN1-201ENST00000371621 GOLM1Q8NBJ4 401 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 UBA3Q8TBC4 463 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 NXNL1Q96CM4 212 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 ELMO2Q96JJ3 720 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 NMRAL1Q9HBL8 299 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 SPAG4Q9NPE6 437 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 ADPRHL2Q9NX46 363 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.96□□□□□ -0.49
PTPN1-201ENST00000371621 BOLA1Q9Y3E2 137 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 RWDD3Q9Y3V2 267 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 NOX1Q9Y5S8 564 aa11.96□□□□□ -0.49
PTPN1-201ENST00000371621 PABPN1LA6NDY0 278 aaKnown RBP11.96□□□□□ -0.5
PTPN1-201ENST00000371621 TRPC5OSA6NMA1 111 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 INO80B-WBP1J3KQ70 363 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 UGT2B4P06133 528 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 FMO4P31512 558 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 SLC9A3P48764 834 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 JAM2P57087 298 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 PIGFQ07326 219 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 ZNF267Q14586 743 aaPredicted RBP11.96□□□□□ -0.5
PTPN1-201ENST00000371621 CYP1B1Q16678 543 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 CA9Q16790 459 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 SLC9B1Q4ZJI4 515 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 SBK1Q52WX2 424 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 RNASEH2BQ5TBB1 312 aaKnown RBP11.96□□□□□ -0.5
PTPN1-201ENST00000371621 ARCQ7LC44 396 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 OR52B2Q96RD2 323 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 INO80BQ9C086 356 aaPredicted RBP11.96□□□□□ -0.5
PTPN1-201ENST00000371621 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.96□□□□□ -0.5
PTPN1-201ENST00000371621 NUDT5Q9UKK9 219 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 PCDHGB4Q9UN71 923 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 PCDHGB5Q9Y5G0 923 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 SPO11Q9Y5K1 396 aa11.96□□□□□ -0.5
PTPN1-201ENST00000371621 SIGLEC16A6NMB1 481 aa11.95□□□□□ -0.5
PTPN1-201ENST00000371621 EML1O00423 815 aa11.95□□□□□ -0.5
PTPN1-201ENST00000371621 RECQL5O94762 991 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms