RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 VPS37BQ9H9H4 285 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 STK39Q9UEW8 545 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 GGT7Q9UJ14 662 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 ANAPC1Q9H1A4 1944 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 CCDC22O60826 627 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 METTL18O95568 372 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 APOEP02649 317 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 URODP06132 367 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 FESP07332 822 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 APRTP07741 180 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ATF6P18850 670 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 KRT15P19012 456 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 PPM1AP35813 382 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ZNF33AQ06730 810 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 PPIDQ08752 370 aaKnown RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 MGAT5Q09328 741 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 GALNT2Q10471 571 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 SEMA5AQ13591 1074 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 FASTKD3Q14CZ7 662 aaKnown RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 BBS9Q3SYG4 887 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 MSS51Q4VC12 460 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 MANEALQ5VSG8 457 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ANKMY2Q8IV38 441 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 PALM2Q8IXS6 379 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 GPR65Q8IYL9 337 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ARHGAP24Q8N264 748 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ATP11CQ8NB49 1132 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 PDZD8Q8NEN9 1154 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 HDAC11Q96DB2 347 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 PAIP2Q9BPZ3 127 aaKnown RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 MARCH2Q9P0N8 246 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 PSMC3IPQ9P2W1 217 aaPredicted RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 TBK1Q9UHD2 729 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ALPK3Q96L96 1907 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 MOCS2O96007 188 aaPredicted RBP13.1□□□□□ -0.31
CLK3-201ENST00000345005 TPBGLP0DKB5 382 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 GARSP41250 739 aaKnown RBP13.1□□□□□ -0.31
CLK3-201ENST00000345005 TUBP50607 506 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 RING1Q06587 406 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 SF3A3Q12874 501 aaKnown RBP eCLIP13.1□□□□□ -0.312e-6■■■■■ 37.8
CLK3-201ENST00000345005 PPIGQ13427 754 aaKnown RBP eCLIP13.1□□□□□ -0.314e-7■■■□□ 16.8
CLK3-201ENST00000345005 RAB33AQ14088 237 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 HP1BP3Q5SSJ5 553 aaPredicted RBP13.1□□□□□ -0.31
CLK3-201ENST00000345005 FAXCQ5TGI0 409 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 OTOP2Q7RTS6 562 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 LONP2Q86WA8 852 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 NPWQ8N729 165 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 BTN2A3PQ96KV6 586 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 VPS11Q9H270 941 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 MMADHCQ9H3L0 296 aaPredicted RBP13.1□□□□□ -0.31
CLK3-201ENST00000345005 XAB2Q9HCS7 855 aaKnown RBP13.1□□□□□ -0.31
CLK3-201ENST00000345005 SEPT10Q9P0V9 454 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 MAFFQ9ULX9 164 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 MAGED2Q9UNF1 606 aaPredicted RBP13.1□□□□□ -0.31
CLK3-201ENST00000345005 CHKBQ9Y259 395 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 PCDHB12Q9Y5F1 795 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 HS3ST4Q9Y661 456 aa13.1□□□□□ -0.31
CLK3-201ENST00000345005 TTC36A6NLP5 189 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 E9PAM4 449 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 SEC24AO95486 1093 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 FGBP02675 491 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 CSH1P0DML2 217 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 CSH2P0DML3 217 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 ALDH1A3P47895 512 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 CCNHP51946 323 aaPredicted RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 WASHC5Q12768 1159 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 KLHL38Q2WGJ6 581 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 SNX30Q5VWJ9 437 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 MFN1Q8IWA4 741 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 NETO2Q8NC67 525 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 FAM13CQ8NE31 585 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 FBXO36Q8NEA4 188 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 C10orf82Q8WW14 230 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 LRRC39Q96DD0 335 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 VAT1Q99536 393 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 TBC1D10AQ9BXI6 508 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 OSBPL1AQ9BXW6 950 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 MLXIPLQ9NP71 852 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 FNIP2Q9P278 1114 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 PRKAG2Q9UGJ0 569 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 ZFP69BQ9UJL9 534 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 TRHDEQ9UKU6 1024 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 WASH4PA8MWX3 477 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 TLR5O60602 858 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 PEX11AO75192 247 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 BANF1O75531 89 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 SPAG6O75602 509 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 TGDSO95455 350 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 TBX18O95935 607 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 ATP5BP06576 529 aaKnown RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 GSTA2P09210 222 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 CA4P22748 312 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 GEMIN4P57678 1058 aaKnown RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 CREMQ03060 361 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 MLLT1Q03111 559 aaPredicted RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 KLC1Q07866 573 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 TAF12Q16514 161 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 SYCP2LQ5T4T6 812 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 IRGCQ6NXR0 463 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms