RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 C14orf80Q86SX3 495 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 EFCAB3Q8N7B9 438 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 TEKT5Q96M29 485 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 TSPAN18Q96SJ8 248 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 ACBD6Q9BR61 282 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 FICDQ9BVA6 458 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 SLC39A8Q9C0K1 460 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 RNPEPL1Q9HAU8 725 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 CHST12Q9NRB3 414 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 A0A0U1RQF3 1178 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 LOC100653049A0A140TA62 436 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 ZMPSTE24O75844 475 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 KRT34O76011 436 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 TBX18O95935 607 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 MYCP01106 439 aaPredicted RBP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 RALBP11234 206 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 PGM1P36871 562 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 TUBP50607 506 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 CLNS1AP54105 237 aaKnown RBP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 MAXP61244 160 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 YWHAHQ04917 246 aaPredicted RBP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 MGAT3Q09327 533 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 SCAPQ12770 1279 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 TUSC3Q13454 348 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 CCDC6Q16204 474 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 ITPRIPL1Q6GPH6 555 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 KYAT3Q6YP21 454 aaKnown RBP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 WDR75Q8IWA0 830 aaKnown RBP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 DENND6AQ8IWF6 608 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 TTC9BQ8N6N2 239 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 RBM15BQ8NDT2 890 aaKnown RBP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 HDAC11Q96DB2 347 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 RBBP8Q99708 897 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 CPNE1Q99829 537 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 THTPAQ9BU02 230 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 FTHL17Q9BXU8 183 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 SLC2A6Q9UGQ3 507 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 C9IYK1 514 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 SNNO75324 88 aaPredicted RBP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 VAPBO95292 243 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 PROCP04070 461 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 CPA3P15088 417 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 CNTFP26441 200 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 SPRP35270 261 aaPredicted RBP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 TIFABQ6ZNK6 161 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 C4orf50Q6ZRC1 276 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 THEM5Q8N1Q8 247 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 PIWIL2Q8TC59 973 aaKnown RBP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 PPP4R1Q8TF05 950 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 SGF29Q96ES7 293 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 SCYL1Q96KG9 808 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 NAT9Q9BTE0 207 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 EBF2Q9HAK2 575 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 CASS4Q9NQ75 786 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 COPG2Q9UBF2 871 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 DCDC2Q9UHG0 476 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 GOLGA8QA0A0J9YX86 632 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 GOLGA8OA6NCC3 632 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 GOLGA8NF8WBI6 632 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 DDHD2O94830 711 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 C2P06681 752 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 MPP1Q00013 466 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 PRPSAP1Q14558 356 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 GRM3Q14832 879 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 FAM171BQ6P995 826 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 MIB1Q86YT6 1006 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 CCNJLQ8IV13 435 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 VPS39Q96JC1 886 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 ZNF570Q96NI8 536 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 TRPV6Q9H1D0 765 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 RBM22Q9NW64 420 aaKnown RBP eCLIP10.54□□□□□ -0.72
LIMA1-201ENST00000341247 OSER1Q9NX31 292 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 LNPEPQ9UIQ6 1025 aa10.54□□□□□ -0.72
LIMA1-201ENST00000341247 TK2O00142 265 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 CCL22O00626 93 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 NEMP1O14524 444 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 SEPT4O43236 478 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 FCGRTP55899 365 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 THOC5Q13769 683 aaKnown RBP10.53□□□□□ -0.72
LIMA1-201ENST00000341247 RCN1Q15293 331 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 ACSBG2Q5FVE4 666 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 GRTP1Q5TC63 336 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 KCTD11Q693B1 232 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 DCLRE1AQ6PJP8 1040 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 NAPRTQ6XQN6 538 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 ATAD1Q8NBU5 361 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 ZSCAN18Q8TBC5 510 aaPredicted RBP10.53□□□□□ -0.72
LIMA1-201ENST00000341247 URGCPQ8TCY9 931 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 KLHL5Q96PQ7 755 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 CYP4F11Q9HBI6 524 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 CSNK1G1Q9HCP0 422 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 DNAJB4Q9UDY4 337 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 SF3B1O75533 1304 aaKnown RBP eCLIP10.53□□□□□ -0.726e-6■■■■■ 117.3
LIMA1-201ENST00000341247 BIRC5O15392 142 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 NCAM2O15394 837 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 IRAK2O43187 625 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 HSPA4LO95757 839 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 TPBGLP0DKB5 382 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 PBX3P40426 434 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 LIMK2P53671 638 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms