RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ZCWPW2Q504Y3 356 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 PAMR1Q6UXH9 720 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 C3P1Q6ZMU1 363 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 TMEM26Q6ZUK4 368 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 ADHFE1Q8IWW8 467 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 OTUD7AQ8TE49 926 aaPredicted RBP3.34□□□□□ -1.87
CSMD3-202ENST00000339701 DEPDC7Q96QD5 511 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 SLC2A11Q9BYW1 496 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 ANKZF1Q9H8Y5 726 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 CRTAC1Q9NQ79 661 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 SLC9A2Q9UBY0 812 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 GTF2IRD1Q9UHL9 959 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 TELO2Q9Y4R8 837 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 BAZ2AQ9UIF9 1905 aaKnown RBP3.34□□□□□ -1.87
CSMD3-202ENST00000339701 LRRC72A6NJI9 287 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 PSTPIP1O43586 416 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 TLR2O60603 784 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 NFATC1O95644 943 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 CER1O95813 267 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 DHFRP00374 187 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 CYP1A2P05177 515 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 HEXAP06865 529 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 NAT2P11245 290 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 SELPP16109 830 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 VARSP26640 1264 aaKnown RBP3.34□□□□□ -1.87
CSMD3-202ENST00000339701 MAGEA3P43357 314 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 ACTR2P61160 394 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 ARHGAP8P85298 464 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 VAC14Q08AM6 782 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 GRM3Q14832 879 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 PDK1Q15118 436 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 PFKFB3Q16875 520 aaPredicted RBP3.34□□□□□ -1.87
CSMD3-202ENST00000339701 USP41Q3LFD5 358 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 SBK1Q52WX2 424 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF484Q5JVG2 852 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 PPP1R15BQ5SWA1 713 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 IL12RB2Q99665 862 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 TUBA1CQ9BQE3 449 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 CCSER1Q9C0I3 900 aa3.34□□□□□ -1.87
CSMD3-202ENST00000339701 SAV1Q9H4B6 383 aaPredicted RBP3.34□□□□□ -1.87
CSMD3-202ENST00000339701 INTS10Q9NVR2 710 aaKnown RBP3.34□□□□□ -1.87
CSMD3-202ENST00000339701 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.34□□□□□ -1.87
CSMD3-202ENST00000339701 C3orf70A6NLC5 250 aaPredicted RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ASNA1O43681 348 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ACSL3O95573 720 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 CYP1A1P04798 512 aaPredicted RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 MBL2P11226 248 aaPredicted RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PIM1P11309 404 aaPredicted RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 OSTNP61366 133 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 MC1RQ01726 317 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 SMCO1Q147U7 214 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 CNKSR3Q6P9H4 555 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 KYAT3Q6YP21 454 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 RRAGAQ7L523 313 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 POLNQ7Z5Q5 900 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 RCOR2Q8IZ40 523 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 MTMR14Q8NCE2 650 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 EPS8L1Q8TE68 723 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 CELF1Q92879 486 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PHB2Q99623 299 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 POLE4Q9NR33 117 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 FAM86C1Q9NVL1 165 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 SHOC2Q9UQ13 582 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 TRAF3IP3Q9Y228 551 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 BTBD3Q9Y2F9 522 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 AAR2Q9Y312 384 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 TESMINQ9Y4I5 508 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PNMA6FA0A0J9YX94 578 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 CCDC154A6NI56 674 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 MFN2O95140 757 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 APOL3O95236 402 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 CSTF2P33240 577 aaKnown RBP eCLIP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PDX1P52945 283 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 COPAP53621 1224 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 OAZ1P54368 228 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PDAP1Q13442 181 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 RIPK1Q13546 671 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PLEKHN1Q494U1 663 aaPredicted RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ZDHHC20Q5W0Z9 365 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 GPR141Q7Z602 305 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 C12orf56Q8IXR9 622 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 SMG7Q92540 1137 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 IRF7Q92985 503 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ZCWPW1Q9H0M4 648 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 KCNN2Q9H2S1 579 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ETNK1Q9HBU6 452 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PTTG3PQ9NZH4 202 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 COMMD9Q9P000 198 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ZC3H7BQ9UGR2 993 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF510Q9Y2H8 683 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PCDHB5Q9Y5E4 795 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ATG2BQ96BY7 2078 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 NOS1APO75052 506 aaPredicted RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 TNFRSF21O75509 655 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 CRTAPO75718 401 aaPredicted RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 SMPD1P17405 629 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PAICSP22234 425 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ACLYP53396 1101 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 C2orf80Q0P641 193 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF667Q5HYK9 610 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms