RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 EFCAB10A6NFE3 127 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 ZSCAN5CA6NGD5 496 aaPredicted RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 AP3D1O14617 1153 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 MFN2O95140 757 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 FAM58BPP0C7Q3 252 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 ATP4AP20648 1035 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 CD86P42081 329 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 COPZ1P61923 177 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 CYP2A13Q16696 494 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 FAAH2Q6GMR7 532 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 CLVS1Q8IUQ0 354 aaPredicted RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 PMM1Q92871 262 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 MRPL17Q9NRX2 175 aaKnown RBP12.81□□□□□ -0.36
SDC3-201ENST00000336798 ITGB1BP2Q9UKP3 347 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 FAM205AQ6ZU69 1335 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 ZNF839A8K0R7 811 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 CLOCKO15516 846 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 ZW10O43264 779 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 DCXO43602 365 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 SPATA31D3P0C874 917 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 GNA13Q14344 377 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 CCNG2Q16589 344 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 SDHAF4Q5VUM1 108 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 SPATA31D4Q6ZUB0 917 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 OR6Y1Q8NGX8 325 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 WDR60Q8WVS4 1066 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 ZNF606Q8WXB4 792 aa12.81□□□□□ -0.36
SDC3-201ENST00000336798 GSAPA4D1B5 854 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 EPN2O95208 641 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 RPN2P04844 631 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 GLI1P08151 1106 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ERCC2P18074 760 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ITGA3P26006 1051 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ADSLP30566 484 aaPredicted RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 NTSP30990 170 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 RPL4P36578 427 aaKnown RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 FAAP100Q0VG06 881 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 AADACL2Q6P093 401 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 SLC27A1Q6PCB7 646 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 SERPINB11Q96P15 392 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CDRT15Q96T59 188 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 FBXO6Q9NRD1 293 aaPredicted RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 PACSIN3Q9UKS6 424 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ZMYND8Q9ULU4 1186 aaPredicted RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 SLC27A5Q9Y2P5 690 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 OR10H1Q9Y4A9 318 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 TM9SF1O15321 606 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ZSCAN5DPP0CG00 497 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 FCGR1AP12314 374 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 PSEN2P49810 448 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 FSCN1Q16658 493 aaKnown RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 PLA2G4EQ3MJ16 856 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 SPANXN3Q5MJ09 141 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 USP45Q70EL2 814 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 SPATA6LQ8N4H0 392 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 NETO2Q8NC67 525 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 DAGLBQ8NCG7 672 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 REPS2Q8NFH8 660 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 GAD1Q99259 594 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 NDNQ99608 321 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 BDH2Q9BUT1 245 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ZNF304Q9HCX3 659 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 BTBD7Q9P203 1132 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 E5RJQ4 531 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 H0Y858 1186 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CLUP10909 449 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 MYBPC1Q00872 1141 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 TROAPQ12815 778 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ABRQ12979 859 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 NDUFAF6Q330K2 333 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CDCA5Q96FF9 252 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 MAP3K14Q99558 947 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CPNE1Q99829 537 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ULBP1Q9BZM6 244 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CYP3A43Q9HB55 503 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 VAV3Q9UKW4 847 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 TISP43B9A030 160 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 LSM8O95777 96 aaKnown RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 POMZP3Q6PJE2 187 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CNSTQ6PJW8 725 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 PACS1Q6VY07 963 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CCDC185Q8N715 623 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 APOL4Q9BPW4 351 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 PDCD2LQ9BRP1 358 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ZFP14Q9HCL3 533 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 TRIM39Q9HCM9 518 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 DNPEPQ9ULA0 475 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 TPP1O14773 563 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 RIPK2O43353 540 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ERN1O75460 977 aaKnown RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 LDLRP01130 860 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 IL12RB1P42701 662 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 IDH2P48735 452 aaKnown RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 SCNN1GP51170 649 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ELAVL2Q12926 359 aaKnown RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 TRAF3Q13114 568 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CCDC153Q494R4 210 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 TCEAL5Q5H9L2 206 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 ADGRA1Q86SQ6 560 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms