RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 RSPH9Q9H1X1 276 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-201ENST00000332345 ATP13A1Q9HD20 1204 aa14.35□□□□□ -0.11
LIMS1-201ENST00000332345 SPTLC3Q9NUV7 552 aa14.35□□□□□ -0.11
LIMS1-201ENST00000332345 VPS51Q9UID3 782 aa14.35□□□□□ -0.11
LIMS1-201ENST00000332345 INTUQ9ULD6 942 aa14.35□□□□□ -0.11
LIMS1-201ENST00000332345 SCML1Q9UN30 329 aa14.35□□□□□ -0.11
LIMS1-201ENST00000332345 CYP8B1Q9UNU6 501 aa14.35□□□□□ -0.11
LIMS1-201ENST00000332345 HS3ST2Q9Y278 367 aa14.35□□□□□ -0.11
LIMS1-201ENST00000332345 FARP1Q9Y4F1 1045 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-201ENST00000332345 OTOGLQ3ZCN5 2332 aa14.35□□□□□ -0.11
LIMS1-201ENST00000332345 NUP205Q92621 2012 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 IGHV1OR15-9A0A0B4J2B8 117 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 CXorf51AA0A1B0GTR3 108 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 EEF2KO00418 725 aaKnown RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 SNAP91O60641 907 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 RAMP2O60895 175 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 LRP3O75074 770 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 C7P10643 843 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 BCKDHBP21953 392 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 CD6P30203 668 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 SSR1P43307 286 aaKnown RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 HCAR3P49019 387 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 TPMTP51580 245 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 CLCN6P51797 869 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 GEMIN4P57678 1058 aaKnown RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 YBEYP58557 167 aaPredicted RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 RPS14P62263 151 aaKnown RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 RPL6Q02878 288 aaKnown RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 PMS2CLQ68D20 193 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 RHOT2Q8IXI1 618 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 FRMD1Q8N878 549 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 RTL3Q8N8U3 475 aaKnown RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 FRS2Q8WU20 508 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 ARHGEF2Q92974 986 aaKnown RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 PEBP4Q96S96 227 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 FAM129BQ96TA1 746 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 PACSIN1Q9BY11 444 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 ACE2Q9BYF1 805 aaPredicted RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 MTG2Q9H4K7 406 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 NDFIP2Q9NV92 336 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 GPATCH2LQ9NWQ4 482 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 USP36Q9P275 1121 aaKnown RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 IMPACTQ9P2X3 320 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 MBD1Q9UIS9 605 aaPredicted RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 NCKAP1Q9Y2A7 1128 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 PCDHGA5Q9Y5G8 931 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 CEP192Q8TEP8 1941 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 MUC22E2RYF6 1773 aaPredicted RBP14.34□□□□□ -0.11
LIMS1-201ENST00000332345 GON4LQ3T8J9 2241 aa14.34□□□□□ -0.11
LIMS1-201ENST00000332345 GPR179Q6PRD1 2367 aa14.33□□□□□ -0.11
LIMS1-201ENST00000332345 CHD5Q8TDI0 1954 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 EPN2O95208 641 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 MT-CO1P00395 513 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 IGLV3-19P01714 112 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 SRCP12931 536 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 CDC25BP30305 580 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 CYLC1P35663 651 aaPredicted RBP14.33□□□□□ -0.12
LIMS1-201ENST00000332345 MAGEA1P43355 309 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 ELAVL3Q14576 367 aaKnown RBP14.33□□□□□ -0.12
LIMS1-201ENST00000332345 SPA17Q15506 151 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 TTC31Q49AM3 519 aaPredicted RBP14.33□□□□□ -0.12
LIMS1-201ENST00000332345 PPP6R3Q5H9R7 873 aaPredicted RBP14.33□□□□□ -0.12
LIMS1-201ENST00000332345 DSG4Q86SJ6 1040 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 ZNF354CQ86Y25 554 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 TMTC1Q8IUR5 882 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 TMEFF1Q8IYR6 380 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 STK40Q8N2I9 435 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 DCLK2Q8N568 766 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 SLC35G2Q8TBE7 412 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 TEKT4Q8WW24 435 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 CCDC114Q96M63 670 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 ARRDC1-AS1Q9H2J1 176 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 ZWILCHQ9H900 591 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 LUC7LQ9NQ29 371 aaKnown RBP14.33□□□□□ -0.12
LIMS1-201ENST00000332345 NEU3Q9UQ49 428 aa14.33□□□□□ -0.12
LIMS1-201ENST00000332345 WDR87Q6ZQQ6 2873 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 ZSCAN5CA6NGD5 496 aaPredicted RBP14.32□□□□□ -0.12
LIMS1-201ENST00000332345 KDELR3O43731 214 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 FOXD2O60548 495 aaPredicted RBP14.32□□□□□ -0.12
LIMS1-201ENST00000332345 ZMPSTE24O75844 475 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 PROSCO94903 275 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 GLDCP23378 1020 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 IL1R2P27930 398 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 ACVRL1P37023 503 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 ARL4AP40617 200 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 ARHGAP25P42331 645 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 DPP6P42658 865 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 RECQLP46063 649 aaPredicted RBP14.32□□□□□ -0.12
LIMS1-201ENST00000332345 DHPSP49366 369 aaPredicted RBP14.32□□□□□ -0.12
LIMS1-201ENST00000332345 CREB5Q02930 508 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 CST6Q15828 149 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 CA9Q16790 459 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 PARP15Q460N3 678 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 KCNT1Q5JUK3 1230 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 FAM46CQ5VWP2 391 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 DAB2IPQ5VWQ8 1189 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 LINGO4Q6UY18 593 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 RFX8Q6ZV50 586 aa14.32□□□□□ -0.12
LIMS1-201ENST00000332345 CYP4V2Q6ZWL3 525 aaPredicted RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms