RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 NEUROG3Q9Y4Z2 214 aa20.03■□□□□ 0.8
LIME1-201ENST00000309546 KNL1Q8NG31 2342 aa20.03■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3DA0A087WVF3 549 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3IA0A087WXS9 549 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3EA0A087X179 549 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3KA0A087X1G2 549 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3FA6NER0 549 aaPredicted RBP20.02■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3LB9A6J9 549 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 C1QTNF3-AMACRE9PGA6 284 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 H0Y8X5 98 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 FLRT2O43155 660 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 RTN2O75298 545 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3HP0C7X1 549 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 CHRNB2P17787 502 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 OR1E1P30953 314 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 STAT1P42224 750 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 VASPP50552 380 aaPredicted RBP20.02■□□□□ 0.8
LIME1-201ENST00000309546 CCT8P50990 548 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 PPP2CBP62714 309 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 PPP2CAP67775 309 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 MYL5Q02045 173 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 SUZ12Q15022 739 aaKnown RBP20.02■□□□□ 0.8
LIME1-201ENST00000309546 FAM46CQ5VWP2 391 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3GQ6DHY5 549 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3CQ6IPX1 549 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 TBC1D3Q8IZP1 549 aaPredicted RBP20.02■□□□□ 0.8
LIME1-201ENST00000309546 ATP11CQ8NB49 1132 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 NEK11Q8NG66 645 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 SLC30A5Q8TAD4 765 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 RHBDD1Q8TEB9 315 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 VPS51Q9UID3 782 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 SIK3Q9Y2K2 1263 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 PCDHGB2Q9Y5G2 931 aa20.02■□□□□ 0.8
LIME1-201ENST00000309546 KMT2BQ9UMN6 2715 aaPredicted RBP20.02■□□□□ 0.79
LIME1-201ENST00000309546 A0A0D9SEW6 157 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 CBFA2T3O75081 653 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 CYP1A1P04798 512 aaPredicted RBP20.01■□□□□ 0.79
LIME1-201ENST00000309546 SRCP12931 536 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 CDK11BP21127 795 aaKnown RBP20.01■□□□□ 0.79
LIME1-201ENST00000309546 CTSKP43235 329 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 CCR5P51681 352 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 C6orf118Q5T5N4 469 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 LINGO4Q6UY18 593 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 SETD3Q86TU7 594 aaPredicted RBP20.01■□□□□ 0.79
LIME1-201ENST00000309546 DCAF4L2Q8NA75 395 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 PIP4K2CQ8TBX8 421 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 SKA1Q96BD8 255 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 SERAC1Q96JX3 654 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 C1orf74Q96LT6 269 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 TMEM121BQ9BXQ6 578 aaPredicted RBP20.01■□□□□ 0.79
LIME1-201ENST00000309546 SEPT11Q9NVA2 429 aaKnown RBP20.01■□□□□ 0.79
LIME1-201ENST00000309546 TMEM51Q9NW97 253 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 APOBEC2Q9Y235 224 aaKnown RBP20.01■□□□□ 0.79
LIME1-201ENST00000309546 HS3ST2Q9Y278 367 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 BTBD3Q9Y2F9 522 aa20.01■□□□□ 0.79
LIME1-201ENST00000309546 GOLGA8CPA6NN73 597 aa20■□□□□ 0.79
LIME1-201ENST00000309546 DRGXA6NNA5 263 aa20■□□□□ 0.79
LIME1-201ENST00000309546 LGALS16A8MUM7 142 aa20■□□□□ 0.79
LIME1-201ENST00000309546 K7ERQ8 282 aa20■□□□□ 0.79
LIME1-201ENST00000309546 MCF2LO15068 1137 aa20■□□□□ 0.79
LIME1-201ENST00000309546 VILLO15195 856 aa20■□□□□ 0.79
LIME1-201ENST00000309546 ALOX15BO15296 676 aa20■□□□□ 0.79
LIME1-201ENST00000309546 GJB6O95452 261 aa20■□□□□ 0.79
LIME1-201ENST00000309546 MT-CO1P00395 513 aa20■□□□□ 0.79
LIME1-201ENST00000309546 WNT1P04628 370 aa20■□□□□ 0.79
LIME1-201ENST00000309546 MMP8P22894 467 aa20■□□□□ 0.79
LIME1-201ENST00000309546 RRM1P23921 792 aa20■□□□□ 0.79
LIME1-201ENST00000309546 SDC4P31431 198 aa20■□□□□ 0.79
LIME1-201ENST00000309546 UBXN1Q04323 297 aa20■□□□□ 0.79
LIME1-201ENST00000309546 CNTN1Q12860 1018 aa20■□□□□ 0.79
LIME1-201ENST00000309546 C15orf59Q2T9L4 293 aaPredicted RBP20■□□□□ 0.79
LIME1-201ENST00000309546 RAB6CQ53S08 254 aa20■□□□□ 0.79
LIME1-201ENST00000309546 ACBD5Q5T8D3 534 aaPredicted RBP20■□□□□ 0.79
LIME1-201ENST00000309546 TRIM72Q6ZMU5 477 aa20■□□□□ 0.79
LIME1-201ENST00000309546 RAB44Q7Z6P3 723 aaPredicted RBP20■□□□□ 0.79
LIME1-201ENST00000309546 OR7D4Q8NG98 312 aa20■□□□□ 0.79
LIME1-201ENST00000309546 RXFP2Q8WXD0 754 aa20■□□□□ 0.79
LIME1-201ENST00000309546 GATA6Q92908 595 aa20■□□□□ 0.79
LIME1-201ENST00000309546 CCDC114Q96M63 670 aa20■□□□□ 0.79
LIME1-201ENST00000309546 HAPLN3Q96S86 360 aa20■□□□□ 0.79
LIME1-201ENST00000309546 ZYG11BQ9C0D3 744 aa20■□□□□ 0.79
LIME1-201ENST00000309546 RAB6CQ9H0N0 254 aa20■□□□□ 0.79
LIME1-201ENST00000309546 LIMA1Q9UHB6 759 aaKnown RBP20■□□□□ 0.79
LIME1-201ENST00000309546 PPM1HQ9ULR3 514 aa20■□□□□ 0.79
LIME1-201ENST00000309546 MSRB2Q9Y3D2 182 aa20■□□□□ 0.79
LIME1-201ENST00000309546 DAAM1Q9Y4D1 1078 aa20■□□□□ 0.79
LIME1-201ENST00000309546 FARP1Q9Y4F1 1045 aaPredicted RBP20■□□□□ 0.79
LIME1-201ENST00000309546 CABIN1Q9Y6J0 2220 aa20■□□□□ 0.79
LIME1-201ENST00000309546 CEP295Q9C0D2 2601 aa20■□□□□ 0.79
LIME1-201ENST00000309546 FRYQ5TBA9 3013 aa20■□□□□ 0.79
LIME1-201ENST00000309546 DOCK9Q9BZ29 2069 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 USP24Q9UPU5 2620 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 IGLV3-10A0A075B6K4 115 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 WNT9AO14904 365 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 SLC7A4O43246 635 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 PLRG1O43660 514 aaKnown RBP19.99■□□□□ 0.79
LIME1-201ENST00000309546 GLDCP23378 1020 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 CD38P28907 300 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 MAT2AP31153 395 aaKnown RBP19.99■□□□□ 0.79
LIME1-201ENST00000309546 NSFP46459 744 aaKnown RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms