RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 FOXN3O00409 490 aaPredicted RBP13.1□□□□□ -0.31
CD44-203ENST00000278386 ALOX15BO15296 676 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 ATP9BO43861 1147 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 RFPL3O75679 317 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 HNF1BP35680 557 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 KRT83P78385 493 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 DEUP1Q05D60 604 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 CNTN1Q12860 1018 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 DNAJC3Q13217 504 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 SHBQ15464 509 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 SMAD1Q15797 465 aaKnown RBP13.1□□□□□ -0.31
CD44-203ENST00000278386 COL28A1Q2UY09 1125 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 SETMARQ53H47 684 aaPredicted RBP13.1□□□□□ -0.31
CD44-203ENST00000278386 HSP90AA4PQ58FG1 418 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 BRMS1LQ5PSV4 323 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 FAM102AQ5T9C2 384 aaPredicted RBP13.1□□□□□ -0.31
CD44-203ENST00000278386 AGBL4Q5VU57 503 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 OTUD1Q5VV17 481 aaPredicted RBP13.1□□□□□ -0.31
CD44-203ENST00000278386 C14orf80Q86SX3 495 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 IRF2BP1Q8IU81 584 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 ZDHHC17Q8IUH5 632 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 MLKLQ8NB16 471 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 ATP11CQ8NB49 1132 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 TMEM35BQ8NCS4 154 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 ZNF397Q8NF99 534 aaPredicted RBP13.1□□□□□ -0.31
CD44-203ENST00000278386 SAP25Q8TEE9 199 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 ALG14Q96F25 216 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 MYOCQ99972 504 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 C2orf49Q9BVC5 232 aaPredicted RBP13.1□□□□□ -0.31
CD44-203ENST00000278386 KDM4CQ9H3R0 1056 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 WDCPQ9H6R7 721 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 RRN3Q9NYV6 651 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.1□□□□□ -0.31
CD44-203ENST00000278386 FARP1Q9Y4F1 1045 aaPredicted RBP13.1□□□□□ -0.31
CD44-203ENST00000278386 PAXBP1Q9Y5B6 917 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 TRPM6Q9BX84 2022 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 CELSR3Q9NYQ7 3312 aa13.1□□□□□ -0.31
CD44-203ENST00000278386 TRABD2BA6NFA1 517 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 KPNA3O00505 521 aaPredicted RBP13.09□□□□□ -0.31
CD44-203ENST00000278386 LATO43561 262 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 SNAP91O60641 907 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 MAGEC1O60732 1142 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 CNTN5O94779 1100 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 ADCY5O95622 1261 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 SRCP12931 536 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 RRM1P23921 792 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 CLCN1P35523 988 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 NUDT1P36639 197 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 VASPP50552 380 aaPredicted RBP13.09□□□□□ -0.31
CD44-203ENST00000278386 CLDN6P56747 220 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 BPIFB4P59827 614 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 CYP4F3Q08477 520 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 STAT4Q14765 748 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 TAF3Q5VWG9 929 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 LRRC31Q6UY01 552 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 TFAP2DQ7Z6R9 452 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 TRIM69Q86WT6 500 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 MFSD2AQ8NA29 543 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 MSANTD4Q8NCY6 345 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 HNRNPLLQ8WVV9 542 aaKnown RBP13.09□□□□□ -0.31
CD44-203ENST00000278386 NPY6RQ99463 290 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 NDST4Q9H3R1 872 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 DYRK4Q9NR20 520 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 VPS51Q9UID3 782 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 DMTF1Q9Y222 760 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 SNX10Q9Y5X0 201 aa13.09□□□□□ -0.31
CD44-203ENST00000278386 C10orf142B7Z368 130 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 GOLGA8SH3BPF8 625 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 MCF2LO15068 1137 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 RNGTTO60942 597 aaKnown RBP13.08□□□□□ -0.32
CD44-203ENST00000278386 SDC3O75056 442 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 TFE3P19532 575 aaPredicted RBP13.08□□□□□ -0.32
CD44-203ENST00000278386 ACADVLP49748 655 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 BNIP3Q12983 259 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 COL9A2Q14055 689 aaPredicted RBP13.08□□□□□ -0.32
CD44-203ENST00000278386 DRAP1Q14919 205 aaPredicted RBP13.08□□□□□ -0.32
CD44-203ENST00000278386 VWA3BQ502W6 1294 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 ALFQ53S48 1182 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 PDZD3Q86UT5 571 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 IQCHQ86VS3 1027 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 TMPRSS12Q86WS5 348 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 FAM71AQ8IYT1 594 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 PDCD7Q8N8D1 485 aaKnown RBP13.08□□□□□ -0.32
CD44-203ENST00000278386 GRIN3AQ8TCU5 1115 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 FAM131CQ96AQ9 280 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 NXPE2Q96DL1 559 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 TBCBQ99426 244 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 PSMB7Q99436 277 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 TUBGCP2Q9BSJ2 902 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 PREBQ9HCU5 417 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 ARHGEF38Q9NXL2 777 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 MPP6Q9NZW5 540 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 ARHGAP20Q9P2F6 1191 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 DKK4Q9UBT3 224 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 DACH1Q9UI36 760 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 PPM1HQ9ULR3 514 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 HS3ST2Q9Y278 367 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 CA5BQ9Y2D0 317 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 TBC1D30Q9Y2I9 924 aa13.08□□□□□ -0.32
CD44-203ENST00000278386 PCDHGA1Q9Y5H4 931 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms