RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 OTOP3Q7RTS5 596 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 RNF168Q8IYW5 571 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 ATPAF2Q8N5M1 289 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 RTL3Q8N8U3 475 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 BANPQ8N9N5 519 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 IGSF21Q96ID5 467 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 MAGEB18Q96M61 343 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 TGS1Q96RS0 853 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 VAT1Q99536 393 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 ELAC2Q9BQ52 826 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 MTIF3Q9H2K0 278 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 UBP1Q9NZI7 540 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 MTRRQ9UBK8 725 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 ARHGAP42A6NI28 874 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC38A8A6NNN8 435 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 C2CD2LO14523 706 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 HMBSP08397 361 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC2A3P11169 496 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 CCNCP24863 283 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 BMP8BP34820 402 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 OR1D2P34982 312 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 COG7P83436 770 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 CACNA2D3Q8IZS8 1091 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 LZTR1Q8N653 840 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 NOL6Q9H6R4 1146 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 CCSER2Q9H7U1 834 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 MARCH2Q9P0N8 246 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC17A6Q9P2U8 582 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 ZNF180Q9UJW8 692 aa17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 MAGED2Q9UNF1 606 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 RANBP2P49792 3224 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-216ENST00000598201 TRIM49D1C9J1S8 452 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 ALDH1A2O94788 518 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 ZDHHC11BP0C7U3 371 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 CCNB1P14635 433 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 TAC1P20366 129 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 RPL10AP62906 217 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 DEFB103AP81534 67 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 IL9RQ01113 521 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 ZNF33AQ06730 810 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC20A2Q08357 652 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 IFT88Q13099 833 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 TRIP4Q15650 581 aaPredicted RBP17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 ZKSCAN8Q15776 578 aaPredicted RBP17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 USP41Q3LFD5 358 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 TTC39BQ5VTQ0 682 aaPredicted RBP17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 NUGGCQ68CJ6 796 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 ITPRIPL1Q6GPH6 555 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 CES3Q6UWW8 571 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 C2orf15Q8WU43 125 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 APOL2Q9BQE5 337 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 GGA2Q9UJY4 613 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC4A7Q9Y6M7 1214 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 PGAM1P18669 254 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 PSEN1P49768 467 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 BMPR2Q13873 1038 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 CRYMQ14894 314 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 FAM117BQ6P1L5 589 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 CYS1Q717R9 158 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 TFAP2DQ7Z6R9 452 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 TCP10LQ8TDR4 215 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 SPOCK2Q92563 424 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 TOP1MTQ969P6 601 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 OXCT2Q9BYC2 517 aaPredicted RBP17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 CASS4Q9NQ75 786 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC17A7Q9P2U7 560 aa17.41■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC12A8A0AV02 714 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 HMX2A2RU54 273 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 WASH4PA8MWX3 477 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 CNTN5O94779 1100 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 IGLV3-27P01718 113 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 PYGBP11216 843 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 GBP2P32456 591 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 PAPOLAP51003 745 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 SMAD1Q15797 465 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 ALFQ53S48 1182 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 LVRNQ6Q4G3 990 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 SPATS2Q86XZ4 545 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 OLA1Q9NTK5 396 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 IL1RAPL1Q9NZN1 696 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 MATN3O15232 486 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 CACNG3O60359 315 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 ZWINTO95229 277 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 SNRPAP09012 282 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 ADRA1DP25100 572 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC18A2Q05940 514 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 RAP1GAP2Q684P5 730 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 CHRDL2Q6WN34 429 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 SPATA22Q8NHS9 363 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 IGSF8Q969P0 613 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 CABS1Q96KC9 395 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 BTN2A3PQ96KV6 586 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 FCRL3Q96P31 734 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 IL12RB2Q99665 862 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 CLSTN3Q9BQT9 956 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 TTLL2Q9BWV7 592 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 COMMD8Q9NX08 183 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 BACE2Q9Y5Z0 518 aa17.4■□□□□ 0.38
SHKBP1-216ENST00000598201 NYNRINQ9P2P1 1898 aaKnown RBP17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms